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Information on SUBCLASS 2.1.54
Subclass Accession number: 4554
Subclass: 2.1.54 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 11.9 +/- 13.6
Average RMSD (Å) : 0.800 +/- 0.265

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XphDhX
(φψ)-conformation: aappaa
Pattern: [AEP][EQ]x[GIV]x[NQR][FI][D][IMV][AGR][GPY][FVW][FTY]x
Conservation:-0.4061.196-0.972-0.689-0.8310.1590.4282.7060.513-0.477-0.831-0.0530.018-0.760
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1mzg_A_941mzg   A94107PQDIVNFDVRPWFEHHHHHH---HHHHHaaaaaaxxaaaaaa
1pkx_A_1171pkx   A118131EEAVEQIDIGGVTLHHHHHT--SHHHHHaaaaaaxxaaaaaa
2lis_A_822lis   A90103AEIGRRIDMAYFYDHHHHHHS-THHHHHaaaaaaxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1mzg_A_941mzg   A     MSESELENOMETHIONINE P - 94
1mzg_A_941mzg   A     MSESELENOMETHIONINE D - 96
1mzg_A_941mzg   A     MSESELENOMETHIONINE I - 97
1mzg_A_941mzg   A     MSESELENOMETHIONINE F - 100
1mzg_A_941mzg   A     MSESELENOMETHIONINE P - 104
1mzg_A_941mzg   A     MSESELENOMETHIONINE W - 105
1mzg_A_941mzg   A     MSESELENOMETHIONINE F - 106
1mzg_A_941mzg   A     MSESELENOMETHIONINE E - 107
1pkx_A_1171pkx   A     XMPXANTHOSINE-5'-MONOPHOSPHATE I - 124
1pkx_A_1171pkx   A     XMPXANTHOSINE-5'-MONOPHOSPHATE D - 125
1pkx_A_1171pkx   A     XMPXANTHOSINE-5'-MONOPHOSPHATE I - 126
1pkx_A_1171pkx   A     XMPXANTHOSINE-5'-MONOPHOSPHATE G - 127
1pkx_A_1171pkx   A     XMPXANTHOSINE-5'-MONOPHOSPHATE G - 128
1pkx_A_1171pkx   A     XMPXANTHOSINE-5'-MONOPHOSPHATE V - 129
1pkx_A_1171pkx   A     XMPXANTHOSINE-5'-MONOPHOSPHATE L - 131

Clusters included in this Subclass
CLUSTER: HH.3.287