Information on SUBCLASS 3.35.1 |
Subclass Accession number: 4769
Subclass: 3.35.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 2 Average sequence ID (%) : 17.6 +/- 0.0 Average RMSD (Å) : 0.600 +/- 0.000 Consensus geometry
|
Consensus Sequence: | XhhXGhX |
(φψ)-conformation: | aappeaa |
Pattern: | [AP] | [GL] | [AQ] | [MV] | [AV] | [KP] | [G] | [GI] | [EL] | [GR] | [LY] | [AI] | [L] | [FK] | [GR] | [M] | [GV] |
Conservation: | 0.029 | -1.118 | -0.299 | 0.356 | -0.135 | 0.193 | 2.486 | -1.118 | -0.954 | -0.299 | 0.029 | -0.462 | 1.175 | -0.626 | -0.299 | 1.831 | -0.790 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1h2s_A_95 | 1h2s | A | 114 | 130 | AGAMVPGIERYALFGMG | HHHH--STHHHHHHHHH | aaaabxeaaaaaaaaaa |
1uoh_A_208 | 1uoh | A | 208 | 224 | PLQVAKGGLGLILKRMV | HHHH--TTHHHHHHHHH | aaaaxxeaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h2s_A_95 | 1h2s | A | RETRETINAL | V - 108 |
1h2s_A_95 | 1h2s | A | RETRETINAL | M - 109 |
1h2s_A_95 | 1h2s | A | RETRETINAL | A - 111 |
1h2s_A_95 | 1h2s | A | RETRETINAL | G - 112 |
1h2s_A_95 | 1h2s | A | RETRETINAL | F - 113 |
1h2s_A_95 | 1h2s | A | RETRETINAL | L - 126 |
1h2s_A_95 | 1h2s | A | RETRETINAL | F - 127 |
1h2s_A_95 | 1h2s | A | RETRETINAL | G - 130 |
1h2s_A_95 | 1h2s | A | RETRETINAL | A - 131 |
1h2s_A_95 | 1h2s | A | RETRETINAL | F - 134 |
Clusters included in this Subclass |
CLUSTER: HH.4.265 |