ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.3.5

Subclass Accession number: 4882
Subclass: 5.3.5

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 15.4 +/- 15.0
Average RMSD (Å) : 0.800 +/- 0.300

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XpXXpLppX
(φψ)-conformation:	aapaappaa

Pattern:	[AEK]	x	[IL]	[AST]	x	[AT]	[FGL]	[ER]	[EKL]	[IL]	x	[NST]	x	[DP]	[ENR]	[L]	[NST]	[DE]	[DEP]	x	[IK]	[IK]	[AK]	[AFV]	[ILV]	[EFQ]
Conservation:	-0.425	-1.127	1.152	0.075	-0.826	0.439	-1.427	0.840	-1.027	1.152	-1.127	0.276	-1.327	1.310	-0.025	1.979	0.276	2.013	0.176	-0.826	-0.543	-0.493	0.362	-0.826	0.777	-0.826

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1jqn_A_102	1jqn	A	102	127	EVIARTLRKLKNQPELSEDTIKKAVE	HHHHHHHHHHHT-TT--HHHHHHHHH	aaaaaaaaaaaaxaaxxaaaaaaaaa
1lp1_A_5	1lp1	A	7	32	KELSVAGREIVTLPNLNDPQKKAFIF	HHHHHHHHHHHT-TTS-HHHHHHHHH	aaaaaaaaaaaaxaaxxaaaaaaaaa
1rtr_A_105	1rtr	A	114	139	ALLTKAFELISSDDRLTDEVKIKVLQ	HHHHHHHHHHHT-TTS-HHHHHHHHH	aaaaaaaaaaaaxaabxaaaaaaaaa

Clusters included in this Subclass