ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.21.1

Subclass Accession number: 4964
Subclass: 6.21.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 13.1 +/- 17.8
Average RMSD (Å) : 1.260 +/- 0.391

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XhcXpphppp
(φψ)-conformation:	aalpabbpaa

Pattern:	x	[APQ]	[GSTV]	[ILV]	x	x	[agi]	[ALTV]	[IK]	x	[ACFL]	[GKNQ]	[IKTV]	[DEQR]	[EHRS]	[AILVY]	[DEST]	[DENPS]	[DRS]	[alv]	[fv]	x	x	[ALVY]	x	[EKS]	[afkl]	[iltv]	[ACFLT]
Conservation:	-0.946	0.509	-0.515	2.871	-0.120	-0.983	-1.619	0.236	-0.110	-0.552	-0.097	0.769	-0.079	1.120	0.744	0.025	0.886	0.316	1.520	-0.334	-0.396	-0.920	-0.796	-0.264	-0.700	1.982	-1.314	-0.499	-0.732

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f1e_A_85	1f1e	A	85	113	RATVRRILKRAGIERASSDAVDLYNKLIC	HHHHHHHHHHTT--B--HHHHHHHHHHHH	aaaaaaaaaaagxabbxaaaaaaaaaaaa
1gz3_A_471	1gz3	A	471	499	FPGVALAVILCNTRHISDSVFLEAAKALT	HHHHHHHHHHTT-----HHHHHHHHHHHH	aaaaaaaaaaalxabbxaaaaaaaaaaaa
1ng6_A_20	1ng6	A	30	58	KASLQNEAIKLKKDSLTEDEELTVLSREL	HHHHHHHHHHTTSS---HHHHHHHHHHHH	aaaaaaaaaaalbabbxaaaaaaaaaaaa
1o0s_A_483	1o0s	A	483	511	FPGVALGTILFQIRHVDNDLFLLAAKKVA	HHHHHHHHHHHTBS---HHHHHHHHHHHH	aaaaaaaaaaalxabbbaaaaaaaaaaaa
1taf_A_20	1taf	A	22	50	AQVIMSILKELNVQEYEPRVVNQLLEFTF	HHHHHHHHHHTT-----THHHHHHHHHHH	aaaaaaaaaaavbabbxaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass