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Information on SUBCLASS 8.8.1
Subclass Accession number: 5037
Subclass: 8.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 25.8 +/- 30.3
Average RMSD (Å) : 0.950 +/- 0.485

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: hhXhXXppVphX
(φψ)-conformation: aalbpaaappaa
Pattern: xxxxxxxxxxxxxxxxxxxxxx
Conservation:-1.5450.1292.074-0.863-1.064-0.7950.0490.810-0.4770.851-1.0681.0550.6131.2601.666-0.141-1.561-0.5430.1290.230-0.265-0.543
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bgx_T_6381bgx   T641662ETASWMFGVPREAVDPLMRRAAHHHHHHHT--TTS--TTHHHHHaaaaaaavbxaaaxxaaaaaaa
1doi_*_81doi   -829YEVVDDNGWDMYDDDVFGEASDHHHHHHHT--TTTS-HHHHHHHaaaaaaavxbaaaxxaaaaaaa
1kfs_A_7331kfs   A736757ATAAEVFGLPLETVTSEQRRSAHHHHHHTT--TTT--HHHHHHHaaaaaaalbxaaapxaaaaaaa
1nk4_A_6811nk4   A684705KTAMDIFQVSEDEVTPNMRRQAHHHHHHTT--GGG--HHHHHHHaaaaaaalbxaaaxxaaaaaaa
1qtm_A_6381qtm   A641662ETASWMFGVPREAVDPLMRRAAHHHHHHHT--GGG--HHHHHHHaaaaaaavbpaaaxxaaaaaaa
1s3e_A_1591s3e   A167188LFVNLCVTAETHEVSALWFLWYHHHHHHHSS-TTTSBHHHHHHHaaaaaaalbxaaabxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1qtm_A_6381qtm   A     TTPTHYMIDINE-5'-TRIPHOSPHATE H - 639
1qtm_A_6381qtm   A     TTPTHYMIDINE-5'-TRIPHOSPHATE R - 659
1qtm_A_6381qtm   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE R - 660
1qtm_A_6381qtm   A     TTPTHYMIDINE-5'-TRIPHOSPHATE R - 660
1qtm_A_6381qtm   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE K - 663
1qtm_A_6381qtm   A     MGMAGNESIUM ION K - 663
1qtm_A_6381qtm   A     TTPTHYMIDINE-5'-TRIPHOSPHATE K - 663
1qtm_A_6381qtm   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE T - 664
1qtm_A_6381qtm   A     TTPTHYMIDINE-5'-TRIPHOSPHATE T - 664
1qtm_A_6381qtm   A     TTPTHYMIDINE-5'-TRIPHOSPHATE F - 667
1s3e_A_1591s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL F - 168
1s3e_A_1591s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL L - 171
1s3e_A_1591s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL C - 172
1s3e_A_1591s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL V - 173
1s3e_A_1591s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL Y - 188

Clusters included in this Subclass
CLUSTER: HH.8.31
CLUSTER: HH.9.18