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Information on SUBCLASS 1.1.6
Subclass Accession number: 5272
Subclass: 1.1.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 14.7 +/- 15.4
Average RMSD (Å) : 0.556 +/- 0.181

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXGhX
(φψ)-conformation: aagbb
Pattern: x[acikltv][AFLV][EGKNQS][adekqr][cehknsy][DGR][acflvy]x[ailpt]
Conservation:-0.680-0.5740.4820.3550.165-0.8382.532-0.421-0.589-0.430
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bhp_*_221bhp   -2433LCANVCRCKLHHHHHTTEEEaaaaaalbbb
1e4f_T_1081e4f   T120129EKLKENGKTPHHHHHTTEEEaaaaaavbbw
1g8s_A_1891g8s   A198207EILEAGGFKIHHHHHHTEEEaaaaaagbbx
1jdp_A_1671jdp   A177186EVFQEEGLHTHHHHHHT-EEaaaaaavxxb
1l8a_A_7351l8a   A744753ILAKDYGVGSHHHHHH-EEEaaaaaavxxb
1nh8_A_1601nh8   A160169RTLSQHDLVAHHHHHTTEEEaaaaaalbbx
1nkx_A_3961nkx   A400409YTAGKCGLVPHHHHHTTEEEaaaaaavxbw
1rkd_*_431rkd   -4958VAAGRSGANIHHHHHHT-EEaaaaaagxxb
1vh8_A_741vh8   A8392RQVQEKGYKIHHHHHTTEEEaaaaaavbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bhp_*_221bhp   *     GOLGLYCEROL Q - 22
1bhp_*_221bhp   *     ACTACETATE ION R - 30
1bhp_*_221bhp   *     GOLGLYCEROL L - 33
1nh8_A_1601nh8   A     AMPADENOSINE MONOPHOSPHATE R - 160
1nh8_A_1601nh8   A     AMPADENOSINE MONOPHOSPHATE T - 161
1nh8_A_1601nh8   A     AMPADENOSINE MONOPHOSPHATE L - 162
1nkx_A_3961nkx   A     FEFE (III) ION G - 396
1rkd_*_431rkd   *     RIBRIBOSE K - 43
1rkd_*_431rkd   *     PO4PHOSPHATE ION K - 43
1rkd_*_431rkd   *     RIBRIBOSE N - 46
1vh8_A_741vh8   A     MSESELENOMETHIONINE I - 99
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1rkd_*_431rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.K - 43
1rkd_*_431rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.N - 46

Clusters included in this Subclass
CLUSTER: HE.1.22