Information on SUBCLASS 2.1.18 |
Subclass Accession number: 5338
Subclass: 2.1.18 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 12.7 +/- 14.5 Average RMSD (Å) : 0.625 +/- 0.126 Consensus geometry
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Consensus Sequence: | PXXhpX |
(φψ)-conformation: | aalpbb |
Pattern: | [DEGR] | x | x | x | x | [IVY] | x | [DR] | x | [IL] | x | [PT] | x | x | [AVW] | [DHKT] | x |
Conservation: | -0.266 | -0.717 | -0.830 | -0.999 | -0.095 | 0.892 | -0.604 | 0.657 | -0.943 | 1.956 | -0.379 | 2.468 | -0.887 | 0.425 | -0.255 | -0.379 | -0.044 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ag9_A_100 | 1ag9 | A | 100 | 116 | DALGTIRDIIEPRGATI | HHHHHHHHHHTTTT-EE | aaaaaaaaaaaaavxbx |
1dfm_A_50 | 1dfm | A | 52 | 68 | GTNQYIKDELVPKHWKN | HHHHHHHHHHGGGT-EE | aaaaaaaaaaaaavxxb |
1h70_A_28 | 1h70 | A | 33 | 49 | EQHNAYIRALQTCDVDI | HHHHHHHHHHTTSS-EE | aaaaaaaaaaaaalbxb |
2nac_A_201 | 2nac | A | 201 | 217 | RIGLAVLRRLAPFDVHL | HHHHHHHHHHGGGT-EE | aaaaaaaaaaaaavxxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ag9_A_100 | 1ag9 | A | FMNFLAVIN MONONUCLEOTIDE | D - 100 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | G - 52 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | T - 53 |
1dfm_A_50 | 1dfm | A | CACALCIUM ION | N - 54 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | Y - 56 |
1dfm_A_50 | 1dfm | A | CACALCIUM ION | Y - 56 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | I - 57 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | P - 71 |
Clusters included in this Subclass |
CLUSTER: HE.5.221 |