Logo
Information on SUBCLASS 2.3.17
Subclass Accession number: 534
Subclass: 2.3.17 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.4 (>75 %)  3.4.11 (>75 %)  3.4.11.18 (>75 %)  
GO : GO:0004177 (>75 %)  GO:0008233 (>75 %)  GO:0008235 (>75 %)  GO:0008237 (>75 %)  GO:0008238 (>75 %)  
SCOP : 51350 (>50 %)  55919 (>75 %)  55920 (>75 %)  55921 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 10.0 +/- 10.0
Average RMSD (Å) : 0.767 +/- 0.153

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: pXXpXp
(φψ)-conformation: bbeabb
Pattern: xx[CDK][CKT]x[DKT][CIK][EG][NST][RTW][KT]xxx[EG][IM][QRT][FLV][CE]x
Conservation:-0.704-0.734-0.704-0.271-1.136-0.127-0.9921.4111.169-0.2711.427-0.848-0.992-0.7041.4112.0240.3050.4490.280-0.992
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1iqq_A_1521iqq   A152171KLKCQKKGTTTELVEITLCSEEEEEEETTEEEEEEEEEEEbbbbbbbeabbbxabbbbbb
1kmo_A_4361kmo   A451470LDDKIDIGNWTITPGMRFEHEEEEEEETTEEEEEEEEEEEbbbxbxbeaxbbbwbbbbbb
1vca_A_681vca   A6988YLCTATCESRKLEKGIQVEIEEEEEEETTEEEEEEEEEEExbbbbbbeaxbbbbbbxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE E - 445
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE H - 447
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE W - 449
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 451
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE D - 452
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE D - 453
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE N - 459
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE W - 460
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE P - 464
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE G - 465
1kmo_A_4361kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE M - 466

Clusters included in this Subclass
CLUSTER: HA.2.53
CLUSTER: HA.3.103