Information on SUBCLASS 2.3.5 |
Subclass Accession number: 5367
Subclass: 2.3.5 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 15 Average sequence ID (%) : 15.2 +/- 17.0 Average RMSD (Å) : 0.527 +/- 0.144 Consensus geometry
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Consensus Sequence: | XXhpXh |
(φψ)-conformation: | aababb |
Pattern: | [afilmvy] | x | x | x | [acfy] | [DEQS] | x | [acgilpv] | [ACGILMTV] |
Conservation: | 0.100 | -0.982 | -0.646 | -0.416 | 0.286 | 2.393 | -0.656 | -0.352 | 0.271 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8y_*_23 | 1a8y | - | 26 | 34 | VFKKYEVLA | HHHH-SEEE | aaaababbb |
1b7g_O_71 | 1b7g | O | 74 | 82 | LIKTSDIVV | HHHH-SEEE | aaaaxabbx |
1c7q_A_55 | 1c7q | A | 68 | 76 | IRNHSDALV | HHHH-SEEE | aaaababbb |
1dmg_A_202 | 1dmg | A | 204 | 212 | DMLKYDYLV | HHHHSSEEE | aaaaxabbb |
1e8c_A_399 | 1e8c | A | 401 | 409 | AEEFADVAV | HHHH-SEEE | aaaababbb |
1iq7_A_480 | 1iq7 | A | 480 | 488 | FDEYFSEGC | HHHHSSEEE | aaaaxabeb |
1j23_A_64 | 1j23 | A | 71 | 79 | LKEAYSRPI | HHHH-SEEE | aaaababxb |
1jax_A_58 | 1jax | A | 61 | 69 | AAEACDIAV | HHHH-SEEE | aaaaxabbb |
1js1_X_93 | 1js1 | X | 100 | 108 | MGCYCDIIG | HHHT-SEEE | aaaababbb |
1ll2_A_45 | 1ll2 | A | 51 | 59 | LEIVFDEVI | HHHH-SEEE | aaaababbb |
1m6s_A_183 | 1m6s | A | 186 | 194 | YAGYADSVM | HHHT-SEEE | aaaababbb |
1tpl_A_237 | 1tpl | A | 244 | 252 | MFSYADGCT | HHHTSSEEE | aaaababbb |
1uj2_A_143 | 1uj2 | A | 145 | 153 | VRDLFQMKL | HHHH-SEEE | aaaaxabbb |
1v8a_A_50 | 1v8a | A | 53 | 61 | MIRLADAVV | HHHH-SEEE | aaaaxabbb |
2dnj_A_19 | 2dnj | A | 28 | 36 | IVRRYDIVL | HHHT-SEEE | aaaababbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e8c_A_399 | 1e8c | A | MSESELENOMETHIONINE | A - 399 |
1e8c_A_399 | 1e8c | A | MSESELENOMETHIONINE | I - 400 |
1e8c_A_399 | 1e8c | A | MSESELENOMETHIONINE | A - 401 |
1e8c_A_399 | 1e8c | A | MSESELENOMETHIONINE | E - 402 |
1e8c_A_399 | 1e8c | A | MSESELENOMETHIONINE | A - 408 |
1e8c_A_399 | 1e8c | A | MSESELENOMETHIONINE | V - 409 |
1e8c_A_399 | 1e8c | A | MSESELENOMETHIONINE | V - 410 |
1js1_X_93 | 1js1 | X | PO4PHOSPHATE ION | R - 110 |
1m6s_A_183 | 1m6s | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | M - 194 |
1m6s_A_183 | 1m6s | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | C - 196 |
1m6s_A_183 | 1m6s | A | CACALCIUM ION | C - 196 |
2dnj_A_19 | 2dnj | A | NAGN-ACETYL-D-GLUCOSAMINE | A - 19 |
2dnj_A_19 | 2dnj | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 20 |
2dnj_A_19 | 2dnj | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 21 |
Clusters included in this Subclass |
CLUSTER: HE.2.27 |