ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.7.2

Subclass Accession number: 5430
Subclass: 2.7.2

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 10.4 +/- 12.9
Average RMSD (Å) : 0.625 +/- 0.167

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 0-45

rho (°): 135-180

Consensus Sequence:	XXXXXp
(φψ)-conformation:	aappbb

Pattern:	[adstv]	x	[AGILVY]	x	[ekstwy]	[adnstv]	x	x	x	[hkpqrs]
Conservation:	-0.384	-1.844	0.300	-0.540	-0.613	0.088	0.734	-0.488	1.638	1.109

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cke_A_57	1cke	A	61	70	VPLASHLDVR	HHHHHT--EE	aaaaaapxbb
1gxm_A_478	1gxm	A	493	502	DYILKAQWKQ	HHHHHHS-EE	aaaaaapxxx
1i6i_A_189	1i6i	A	197	206	DSGNKARTVA	HHHHHTS-EE	aaaaaaxxbb
1ihg_A_156	1ihg	A	159	168	AKILENVEVK	HHHHHTS-EE	aaaaaaxxbb
1nbf_A_360	1nbf	A	363	372	SFVDYVAVEQ	HHHHHT--EE	aaaaaaxxbx
1nc5_A_338	1nc5	A	338	347	YDYYVSRERS	HHHHHTS-EE	aaaaaaxxbb
1oi2_A_349	1oi2	A	351	360	TLALWDAPVH	HHHHHHS-EE	aaaaaaxpbb
1so2_A_739	1so2	A	749	758	VWYLTTRPVP	HHHHTTS-EE	aaaaaaxpbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gxm_A_478	1gxm	A	GOLGLYCEROL	N - 479
1gxm_A_478	1gxm	A	GOLGLYCEROL	D - 480
1gxm_A_478	1gxm	A	GOLGLYCEROL	R - 483
1gxm_A_478	1gxm	A	GOLGLYCEROL	F - 484
1i6i_A_189	1i6i	A	MGMAGNESIUM ION	R - 203
1ihg_A_156	1ihg	A	GOLGLYCEROL	M - 156
1ihg_A_156	1ihg	A	GOLGLYCEROL	G - 157
1ihg_A_156	1ihg	A	GOLGLYCEROL	K - 160
1so2_A_739	1so2	A	MGMAGNESIUM ION	H - 741
1so2_A_739	1so2	A	MGMAGNESIUM ION	V - 745

Clusters included in this Subclass

CLUSTER: HE.2.83

CLUSTER: HE.3.281

CLUSTER: HE.4.209