Information on SUBCLASS 2.8.5 |
Subclass Accession number: 5442
Subclass: 2.8.5 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 11.9 +/- 12.0 Average RMSD (Å) : 0.567 +/- 0.153 Consensus geometry
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Consensus Sequence: | XhGpXX |
(φψ)-conformation: | aaepbb |
Pattern: | [FKV] | [KN] | x | [AIV] | [FKR] | [EKQ] | [FTV] | [FL] | [G] | [DEH] | [AGS] | x | [FVY] | [LVW] |
Conservation: | -1.129 | 0.622 | -0.975 | -0.128 | -0.744 | 0.412 | -0.667 | 0.755 | 2.799 | 0.257 | -0.128 | -0.667 | 0.103 | -0.513 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b74_A_185 | 1b74 | A | 185 | 198 | KKEIKKFLGDAEVV | HHHHHHHH-S-EEE | aaaaaaaaexbxxx |
1c3p_A_272 | 1c3p | A | 279 | 292 | FNIVREVFGEGVYL | HHHHHHHH-S-EEE | aaaaaaaaexbxbb |
1j34_B_245 | 1j34 | B | 252 | 265 | VKLAFQTFGHSIFW | HHHHHHHH-S-EEE | aaaaaaaaexbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1j34_B_245 | 1j34 | B | CACALCIUM ION | E - 247 |
1j34_B_245 | 1j34 | B | CGUGAMMA-CARBOXY-GLUTAMIC ACID | H - 261 |
1j34_B_245 | 1j34 | B | CGUGAMMA-CARBOXY-GLUTAMIC ACID | S - 262 |
1j34_B_245 | 1j34 | B | CGUGAMMA-CARBOXY-GLUTAMIC ACID | I - 263 |
1j34_B_245 | 1j34 | B | CACALCIUM ION | I - 263 |
Clusters included in this Subclass |
CLUSTER: HE.2.138 |