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Information on SUBCLASS 2.4.8
Subclass Accession number: 547
Subclass: 2.4.8 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.4.21 (>75 %)  
GO : GO:0004252 (>75 %)  GO:0008236 (>75 %)  
SCOP : 50493 (>75 %)  50494 (>75 %)  50514 (>75 %)  
 Number of loops: 6

Average sequence ID (%) : 5.6 +/- 9.6
Average RMSD (Å) : 0.400 +/- 0.210

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXpcXX
(φψ)-conformation: bbllbp
Pattern: xx[dehns][DGNS][fitv][nprs]
Conservation:-0.411-0.946-0.0901.929-0.028-0.455
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_3591aoz   A363368AINDVSEETTEEbblvbb
1h3i_A_1041h3i   A110115YKDNIREETTEEbblvbp
1hdm_A_1281hdm   A133138HDHSVPEETTEEbbllbp
1ji1_A_3091ji1   A309314SFLGFNEETTEEbxlvxa
1nsc_A_2481nsc   A255260IREGRIEETTEEbblvbx
1uca_A_321uca   A3944QQSGTSEETTEEbblvbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoz_A_3591aoz   A     CUCOPPER (II) ION W - 362
1nsc_A_2481nsc   A     SIAO-SIALIC ACID S - 248
1uca_A_321uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER I - 33
1uca_A_321uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER H - 34
1uca_A_321uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER W - 37

Clusters included in this Subclass
CLUSTER: HA.1.50
CLUSTER: HA.3.133