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Information on SUBCLASS 4.6.1
Subclass Accession number: 5622
Subclass: 4.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 20.6 +/- 19.6
Average RMSD (Å) : 0.756 +/- 0.283

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXPpXhX
(φψ)-conformation: aabaaabb
Pattern: x[acflvy][afgklv]xxx[PT][DEGKNQS]x[flvy]xx
Conservation:-0.346-0.231-0.524-0.400-0.402-0.1852.9720.457-0.4550.366-0.746-0.506
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aui_A_1261aui   A135146ALKILYPKTLFLHHHHHSTTTEEEaaaaabaaabbb
1c4x_A_1111c4x   A118129QLVVEAPERFDKHHHHH-GGGEEEaaaaabaaabax
1cjw_A_671cjw   A7283HFLTLCPELSLGHHHHH-GGGEEEaaaaabaaabbb
1cvl_*_891cvl   -95106YVAAVAPQLVASHHHHH-GGGEEEaaaaabaaabab
1dtd_A_3711dtd   A380391NLVAEHPGLVSKHHHHH-TTTEEEaaaaabaaabbb
1fxd_*_131fxd   -1324ACVEICPDVFEMHHHHH-TTTEEEaaaaabaaabbx
1fxr_A_161fxr   A1627SCVEIAPGAFAMHHHHH-TTTEEEaaaaabaaabbx
1gky_*_141gky   -2031KLFAEYPDSFGFHHHHH-TTTEEEaaaaabaaabbx
1iqz_A_161iqz   A1627ACGAAAPDIYDYHHHHH-TTTEEEaaaaabaaabbb
1jk7_A_1001jk7   A109120AYKIKYPENFFLHHHHHSTTTEEEaaaaabaaabbb
1kic_A_131kic   A2031VLLASNTEKVRLHHHHH-TTTEEEaaaaaxaaabbx
1q44_A_2051q44   A214225YASRENPNKVLFHHHHH-TTTEEEaaaaabaaabbb
1qtr_A_1141qtr   A121132AYAQTHPERVSEHHHTT-TTSEEEaaaaabaaabab
1vjw_*_151vjw   -1526VCENLCPDVFQLHHHHH-TTTEEEaaaaabaaabbx
2hgs_A_3452hgs   A352363AEALAAPSRFVLHHHHHSGGGEEEaaaaabaaabbb
4lip_D_884lip   D95106YVAAVAPDLVASHHHHH-GGGEEEaaaaabaaabab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fxd_*_131fxd   *     F3SFE3-S4 CLUSTER A - 13
1fxd_*_131fxd   *     F3SFE3-S4 CLUSTER C - 14
1fxd_*_131fxd   *     F3SFE3-S4 CLUSTER V - 15
1fxd_*_131fxd   *     F3SFE3-S4 CLUSTER F - 22
1fxd_*_131fxd   *     F3SFE3-S4 CLUSTER M - 24
1fxr_A_161fxr   A     FS4IRON/SULFUR CLUSTER S - 16
1fxr_A_161fxr   A     FS4IRON/SULFUR CLUSTER C - 17
1fxr_A_161fxr   A     FS4IRON/SULFUR CLUSTER V - 18
1fxr_A_161fxr   A     FS4IRON/SULFUR CLUSTER F - 25
1fxr_A_161fxr   A     FS4IRON/SULFUR CLUSTER M - 27
1gky_*_141gky   *     5GPGUANOSINE-5'-MONOPHOSPHATE K - 14
1iqz_A_161iqz   A     FS4IRON/SULFUR CLUSTER A - 16
1iqz_A_161iqz   A     FS4IRON/SULFUR CLUSTER G - 18
1iqz_A_161iqz   A     SULSULFATE ANION A - 20
1iqz_A_161iqz   A     FS4IRON/SULFUR CLUSTER Y - 25
1iqz_A_161iqz   A     FS4IRON/SULFUR CLUSTER Y - 27
1kic_A_131kic   A     NOSINOSINE L - 13
1kic_A_131kic   A     CACALCIUM ION D - 14
1kic_A_131kic   A     NOSINOSINE D - 14
1kic_A_131kic   A     CACALCIUM ION D - 15
1kic_A_131kic   A     NOSINOSINE D - 15
1vjw_*_151vjw   *     FS4IRON/SULFUR CLUSTER V - 15
1vjw_*_151vjw   *     FS4IRON/SULFUR CLUSTER C - 16
1vjw_*_151vjw   *     FS4IRON/SULFUR CLUSTER E - 17
1vjw_*_151vjw   *     FS4IRON/SULFUR CLUSTER F - 24
1vjw_*_151vjw   *     FS4IRON/SULFUR CLUSTER L - 26
2hgs_A_3452hgs   A     ADPADENOSINE-5'-DIPHOSPHATE V - 362
2hgs_A_3452hgs   A     ADPADENOSINE-5'-DIPHOSPHATE K - 364
4lip_D_884lip   D     CCPBUTYLPHOSPHONATE Q - 88
4lip_D_884lip   D     CCPBUTYLPHOSPHONATE G - 89
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
4lip_D_884lip   D OXDOXYANION HOLEQ - 88

Clusters included in this Subclass
CLUSTER: HE.3.54
CLUSTER: HE.4.62
CLUSTER: HE.5.263