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Information on SUBCLASS 4.10.1
Subclass Accession number: 5643
Subclass: 4.10.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 20.7 +/- 20.1
Average RMSD (Å) : 0.762 +/- 0.284

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XhGXpphX
(φψ)-conformation: aaeaaabb
Pattern: [ail]x[adekqrt][aekqr][fhlvy][G]x[DEHKS]x[ailv]xxx
Conservation:0.203-0.809-0.239-0.268-0.2372.876-0.4770.418-0.3030.387-0.787-0.764-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ag9_A_141ag9   A2234IQKQLGKDVADVHHHHHH-TTTEEEEaaaaaMaaabbbb
1ax4_A_1691ax4   A175187NIAQHGADNIVAIHHHHH-GGGEEEEaaaaaMaaaxabb
1c7g_A_1601c7g   A166178LIKEKGAENIAYIHHHHH-GGGEEEEaaaaaMaaababb
1dcq_A_2851dcq   A290302IHRELGVHYSRMQHHHHH-TTT--EEaaaaaeaaabbxb
1f0x_A_101f0x   A1626LARLVGSSHLL..HHHHH-GGGEE..aaaaaeaaabb..
1ik6_A_481ik6   A4859LYERFGPERVID.HHHHH-TTTEEE.aaaaaeaaabbx.
1jnr_A_1531jnr   A161171AKMAVGEENIY..HHHHH-GGGEE..aaaaaMaaabb..
1ni4_B_431ni4   B4354LWKKYGDKRIID.HHHHH-TTTEEE.aaaaaeaaabbx.
1obo_A_10141obo   A10221034IRDEFGNDVVTLHHHHHH-TTTEEEEaaaaaeaaabbxb
1ols_B_601ols   B6071LRDKYGKDRVFN.HHHHH-TTTEEE.aaaaaeaaabbx.
1qlt_A_181qlt   A2839IIRIVGSENVEV.HHHHH-GGGEEE.aaaaaeaaabbx.
1qs0_B_461qs0   B4657LQTKYGKSRVFD.HHHHH-TTTEEE.aaaaaeaaabbx.
1umd_B_441umd   B4455LLQKYGPDRVMD.HHHHH-TTTEEE.aaaaaeaaabbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ag9_A_141ag9   A     FMNFLAVIN MONONUCLEOTIDE N - 14
1ag9_A_141ag9   A     FMNFLAVIN MONONUCLEOTIDE T - 15
1ag9_A_141ag9   A     FMNFLAVIN MONONUCLEOTIDE E - 16
1ag9_A_141ag9   A     BTB2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 17
1ag9_A_141ag9   A     BTB2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL I - 18
1ag9_A_141ag9   A     BTB2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL K - 20
1ag9_A_141ag9   A     BTB2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL M - 21
1ax4_A_1691ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 190
1c7g_A_1601c7g   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 181
1dcq_A_2851dcq   A     ZNZINC ION I - 285
1dcq_A_2851dcq   A     ZNZINC ION E - 286
1dcq_A_2851dcq   A     ZNZINC ION C - 287
1dcq_A_2851dcq   A     ZNZINC ION S - 288
1jnr_A_1531jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 153
1jnr_A_1531jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 154
1ni4_B_431ni4   B     MSESELENOMETHIONINE L - 43
1ni4_B_431ni4   B     MSESELENOMETHIONINE Y - 47
1obo_A_10141obo   A     FMNFLAVIN MONONUCLEOTIDE K - 1014
1obo_A_10141obo   A     FMNFLAVIN MONONUCLEOTIDE T - 1015
1obo_A_10141obo   A     FMNFLAVIN MONONUCLEOTIDE E - 1016
1qs0_B_461qs0   B     MSESELENOMETHIONINE L - 46
1qs0_B_461qs0   B     MSESELENOMETHIONINE Y - 50
1qs0_B_461qs0   B     MSESELENOMETHIONINE R - 54
1qs0_B_461qs0   B     MSESELENOMETHIONINE F - 56
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obo_A_10141obo   A FMAFMN BINDING SITE FOR CHAIN AK - 1014

Clusters included in this Subclass
CLUSTER: HE.3.81
CLUSTER: HE.4.81
CLUSTER: HE.5.76