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Information on SUBCLASS 4.19.1
Subclass Accession number: 5662
Subclass: 4.19.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 14.3 +/- 14.2
Average RMSD (Å) : 0.922 +/- 0.291

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXGhppXh
(φψ)-conformation: aagpapbb
Pattern: [afilmvw]xx[filmtv]xxx[AIL][ADEKNQR][aekqr]x[GN][CILV][hknrt][DNRST]x[fitvy]xx[cgilpv]
Conservation:-0.419-0.665-0.651-0.059-0.628-0.572-0.3570.9220.045-0.115-0.3723.5661.2150.1580.393-0.366-0.148-0.252-0.647-1.045
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aln_*_2731aln   -273292WDATSATLKALGCHSIDRVLHHHHHHHHHHHT---EEEEEaaaaaaaaaaagxabbbbbx
1ihu_A_2091ihu   A215234VARTHLELAAIGLKNQYLVIHHHHHHHHHHHT---EEEEEaaaaaaaaaaagxabbbbbx
1jyk_A_381jyk   A3958IEYQIEFLKEKGINDIIIIVHHHHHHHHHHTT---EEEEEaaaaaaaaaaavxaxbbbxb
1k4k_A_171k4k   A2039LKPVETLANLIGLTRVTIIPHHHHHHHHHHH----EEEEEaaaaaaaaaaavxabbbxbx
1k66_A_161k66   A1938FSTFQRLLQREGVVNPIYRCHHHHHHHHHHTTB-S-EEEEaaaaaaaaaaavxaxwbbbb
1mow_A_451mow   A5372APRMQFLIDELNVKSKIQIVHHHHHHHHHHHT--S-EEEEaaaaaaaaaaavxaxxxbbb
1o98_A_1261o98   A129148LYALLRLAAKEGVKRVYIHGHHHHHHHHHHTT---EEEEEaaaaaaaaaaavxabbbbbx
2liv_*_2032liv   -206225MGQILRQARAAGLKTQFMGPHHHHHHHHHHTT---EEEEEaaaaaaaaaaavxapxbbbx
4tmk_A_164tmk   A2039RNVVVETLEQLGIRDMVFTRHHHHHHHHHHTT---EEEEEaaaaaaaaaaavbaxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE K - 209
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE S - 210
1ihu_A_2091ihu   A     AF3ALUMINUM FLUORIDE S - 210
1ihu_A_2091ihu   A     AF3ALUMINUM FLUORIDE E - 214
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE N - 235
1ihu_A_2091ihu   A     TASTRIHYDROXYARSENITE(III) N - 235
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE G - 236
1ihu_A_2091ihu   A     TASTRIHYDROXYARSENITE(III) G - 236
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE V - 237
1jyk_A_381jyk   A     MSESELENOMETHIONINE F - 45
1k4k_A_171k4k   A     XEXENON H - 19
1k4k_A_171k4k   A     XEXENON L - 20
1k4k_A_171k4k   A     XEXENON I - 37
1k4k_A_171k4k   A     XEXENON I - 38
1mow_A_451mow   A     GOLGLYCEROL K - 49
1mow_A_451mow   A     GOLGLYCEROL Q - 50
1mow_A_451mow   A     GOLGLYCEROL F - 51
1mow_A_451mow   A     GOLGLYCEROL A - 53
1mow_A_451mow   A     GOLGLYCEROL P - 54
1mow_A_451mow   A     GOLGLYCEROL R - 55
1mow_A_451mow   A     GOLGLYCEROL Q - 57
1mow_A_451mow   A     GOLGLYCEROL F - 58
1mow_A_451mow   A     GOLGLYCEROL K - 68
1mow_A_451mow   A     GOLGLYCEROL I - 69
1mow_A_451mow   A     GOLGLYCEROL Q - 70
1mow_A_451mow   A     GOLGLYCEROL I - 71
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE K - 16
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 17
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 18
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 19
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE R - 39
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o98_A_1261o98   A AC8SO4 BINDING SITE FOR CHAIN AR - 134

Clusters included in this Subclass
CLUSTER: HE.3.248
CLUSTER: HE.5.96