ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.23.1

Subclass Accession number: 5669
Subclass: 4.23.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 25.0 +/- 28.4
Average RMSD (Å) : 0.913 +/- 0.348

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	XhcGphXX
(φψ)-conformation:	aallapbb

Pattern:	x	[agklt]	[afgltv]	x	x	[dekr]	x	x	x	[dgns]	[gn]	x	[apq]	x	x	x	x	x
Conservation:	-0.715	-0.690	-0.695	-0.664	0.249	1.003	-0.705	-0.309	-0.025	1.019	3.184	-0.322	0.679	-0.280	0.266	-0.424	-1.031	-0.540

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d0n_A_473	1d0n	A	482	499	LTAQLDEELGGTPVQSRV	HHHHHHHTTTS-SEEEEE	aaaaaaaaagvaxxbbbb
1d0n_A_95	1d0n	A	104	121	FTVQLDDYLNGRAVQHRE	HHHHHHHHTTS--EEEEE	aaaaaaaaavlaxxbbbb
1j72_A_71	1j72	A	80	97	LAVQLDDYLGGRPVQHRE	HHHHHHHHTTT-SEEEEE	aaaaaaaaalvaxxbbbx
1j93_A_127	1j93	A	132	149	ALTILRKEVNNQAAVLGF	HHHHHHHHHTTSSEEEEE	aaaaaaaaallabbxbxb
1kcq_A_207	1kcq	A	217	234	SKGIRDNERSGRARVHVS	HHHHHHHTSTT-SEEEEE	aaaaaaaaalvabbxbxb
1m5h_A_117	1m5h	A	117	134	TGFKLKFFADGYQKEVEV	HHHHHGGGGTT--EEEEE	aaaaaaaaalgapbxbbb
1p8x_A_473	1p8x	A	482	499	LTAQLDEELGGTPVQSRV	HHHHHHHHTTT-SEEEEE	aaaaaaaaavvaxxbbbb
1qlm_A_46	1qlm	A	49	66	GLLFSEVCMGGLATVELT	HHHHHHHHTTT-EEEEEE	aaaaaaaaavvabbbbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kcq_A_207	1kcq	A	CDCADMIUM ION	E - 209
1kcq_A_207	1kcq	A	CDCADMIUM ION	R - 230
1kcq_A_207	1kcq	A	CDCADMIUM ION	V - 231
1kcq_A_207	1kcq	A	CDCADMIUM ION	H - 232
1kcq_A_207	1kcq	A	CDCADMIUM ION	V - 233
1p8x_A_473	1p8x	A	CACALCIUM ION	E - 475
1qlm_A_46	1qlm	A	PO4PHOSPHATE ION	L - 60

Clusters included in this Subclass

CLUSTER: HE.4.165

CLUSTER: HE.6.180

CLUSTER: HE.7.159