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Information on SUBCLASS 4.24.1
Subclass Accession number: 5672
Subclass: 4.24.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 10.8 +/- 13.0
Average RMSD (Å) : 0.791 +/- 0.164

Consensus geometry
d (Å): 17 delta (°): 135-180 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXcXXhXX
(φψ)-conformation: aagbbpbb
Pattern: [adegnqs]xx[cltvy][fgm]xx[filmptv]xx[dehkqrt]x
Conservation:-0.473-0.357-0.9910.4252.477-0.230-0.427-0.410-0.353-0.7701.109-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1azs_B_9671azs   B987998NKHSFNDFKLRVHHHHT-----EEaaaalbbxbxbb
1b9h_A_1421b9h   A149159SADTGVPLLQD.HHHHT--B-EE.aaaavbxxbxx.
1fp1_D_3171fp1   D330339FITVGGRERT..HHHHS---EE..aaaavxbxbx..
1g5b_A_2051g5b   A205216AVFCGNLTLIQVHHHHS---EEEEaaaagxbbbbxa
1gkz_A_1971gkz   A213224EHKYGNAPRVRIHHHHS----EEEaaaavbbxxbbb
1gs5_A_451gs5   A5262MKGLNLPVKKK.HHHHT----EE.aaaavbxbbbb.
1jm6_A_11891jm6   A12051216DKYYMASPDLEIHHHHS----EEEaaaavbbxxbbb
1l5j_A_5121l5j   A518527AAATGVMPLD..HHHHSB--EE..aaaavbbwbx..
1mdo_A_1431mdo   A150160GERYGIPVIED.HHHHT--B-EE.aaaavbpbbxx.
1orr_A_2761orr   A284295EDYCNIDMRFTNHHHHT----EEEaaaavbbxxbbx
1pmm_A_2201pmm   A231242QADTGIDIDMHIHHHH-----EEEaaaavxbbxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b9h_A_1421b9h   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 159
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE L - 321
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE L - 325
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE L - 328
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE M - 329
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE T - 332
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE V - 333
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE E - 337
1g5b_A_2051g5b   A     HGMERCURY (II) ION A - 205
1g5b_A_2051g5b   A     HGMERCURY (II) ION F - 207
1g5b_A_2051g5b   A     HGMERCURY (II) ION C - 208
1g5b_A_2051g5b   A     HGMERCURY (II) ION G - 209
1g5b_A_2051g5b   A     HGMERCURY (II) ION N - 210
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE G - 45
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 45
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE C - 46
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C - 46
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE V - 48
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE D - 49
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE K - 61
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 61
1mdo_A_1431mdo   A     MSESELENOMETHIONINE I - 158
1mdo_A_1431mdo   A     MSESELENOMETHIONINE E - 159
1mdo_A_1431mdo   A     MSESELENOMETHIONINE D - 160
1mdo_A_1431mdo   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE D - 160
1orr_A_2761orr   A     CDPCYTIDINE-5'-DIPHOSPHATE L - 276
1pmm_A_2201pmm   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 243
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gs5_A_451gs5   A ANPANP BINDING SITE FOR CHAIN AG - 45

Clusters included in this Subclass
CLUSTER: HE.3.241
CLUSTER: HE.4.121
CLUSTER: HE.6.45