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Information on SUBCLASS 5.2.1
Subclass Accession number: 5745
Subclass: 5.2.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 16.7 +/- 17.1
Average RMSD (Å) : 0.588 +/- 0.306

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXpppXphh
(φψ)-conformation: aapaapabb
Pattern: [FGILVY]xxx[afklv][adegnpqs]x[afilvwy]x[adeknrt][deknrs][DEKNPQRS][adeqrs][citv][degkqr][afgltv][ITV][ilmv]
Conservation:0.089-1.196-0.672-0.439-0.202-0.557-1.012-0.159-0.773-0.7830.5500.1390.3951.040-0.285-0.3603.0091.217
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1coz_A_521coz   A5269YEHRKLILETIRYVDEVIHHHHHHHHTTSTT--EEEaaaaaaaaaaxaaxabbb
1d2n_A_5201d2n   A529546GELLVQQTKNSDRTPLVSHHHHHHHHHH-SS-SEEEaaaaaaaaaaxaababbb
1dci_A_821dci   A88105LVECFQKISKDSDCRAVVHHHHHHHHHT-TT--EEEaaaaaaaaaaxaaxabbb
1euc_A_1961euc   A196213FTDCLEIFLNDPATEGIIHHHHHHHHHH-TT--EEEaaaaaaaaaaxaaxabbb
1ey3_A_631ey3   A6986LNQALETFEEDPAVGAIVHHHHHHHHHH-TT--EEEaaaaaaaaaaxaaxabbb
1hnu_A_351hnu   A4158LGELLELADRNRDVYFTIHHHHHHHHHH-TT--EEEaaaaaaaaaaxaaxabbb
1mkz_A_541mkz   A5774IRAQVSAWIASDDVQVVLHHHHHHHHHHSSS--EEEaaaaaaaaaaxaaxabbb
1nbu_A_731nbu   A7794GAEIADHVMDDQRVHAVEHHHHHHHHHTSTT--EEEaaaaaaaaaaxaaxabbb
1nqu_A_591nqu   A5976IPVAAGELARKEDIDAVIHHHHHHHHHT-TT--EEEaaaaaaaaaaxaababbb
1nth_A_1401nth   A140157FMPVHMSYALEKEVDTIVHHHHHHHHHT-TT--EEEaaaaaaaaaaxaaxabbb
1nzy_A_291nzy   A3552VTDALNRAEEDDSVGAVMHHHHHHHHHH-TT--EEEaaaaaaaaaaxaababbb
1o7j_A_671o7j   A7390LSQRVNELLARDDVDGVVHHHHHHHHHTSTT--EEEaaaaaaaaaaxaababbb
1o8u_A_421o8u   A4865LAYCFHDIACDRENKVVIHHHHHHHHHH-TT--EEEaaaaaaaaaabaaxabbb
1oi7_A_1871oi7   A187204FKDLLPLFNEDPETEAVVHHHHHHHHHT-TT--EEEaaaaaaaaaaxaaxabbb
1q52_A_631q52   A6986LYRVLDHARMSPDVGVVLHHHHHHHHHH-TT--EEEaaaaaaaaaaxaababbb
2scu_A_1872scu   A187204FIDILEMFEKDPQTEAIVHHHHHHHHHT-TT--EEEaaaaaaaaaaxaababbx
4pga_A_724pga   A7895LGKRVAELADSNDVDGIVHHHHHHHHHH-TT-SEEEaaaaaaaaaaxaababbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d2n_A_5201d2n   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 522
1dci_A_821dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED R - 82
1dci_A_821dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED A - 83
1dci_A_821dci   A     EDO1,2-ETHANEDIOL W - 85
1euc_A_1961euc   A     PO4PHOSPHATE ION E - 217
1mkz_A_541mkz   A     MSESELENOMETHIONINE V - 73
1mkz_A_541mkz   A     MSESELENOMETHIONINE L - 74
1mkz_A_541mkz   A     MSESELENOMETHIONINE I - 75
1mkz_A_541mkz   A     MSESELENOMETHIONINE T - 76
1nbu_A_731nbu   A     HHP6-HYDROXYMETHYL-7,8-DIHYDROPTERIN I - 73
1nbu_A_731nbu   A     HHP6-HYDROXYMETHYL-7,8-DIHYDROPTERIN E - 74
1nqu_A_591nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE G - 79
1nqu_A_591nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE V - 80
1nqu_A_591nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE L - 81
1nqu_A_591nqu   A     PO4PHOSPHATE ION I - 82
1nqu_A_591nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE I - 82
1nth_A_1401nth   A     BGX4-METHYL-PYRROLINE-5-CARBOXYLIC ACID V - 157
1nzy_A_291nzy   A     CACALCIUM ION G - 49
1nzy_A_291nzy   A     CACALCIUM ION A - 50
1o7j_A_671o7j   A     GOLGLYCEROL G - 67
1o7j_A_671o7j   A     GOLGLYCEROL D - 68
1o7j_A_671o7j   A     GOLGLYCEROL L - 71
2scu_A_1872scu   A     NEPN1-PHOSPHONOHISTIDINE E - 208
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7j_A_671o7j   A AC3GOL BINDING SITE FOR CHAIN AD - 68

Clusters included in this Subclass
CLUSTER: HE.5.338
CLUSTER: HE.5.51
CLUSTER: HE.6.22
CLUSTER: HE.7.52