Information on SUBCLASS 5.6.2 |
Subclass Accession number: 5761
Subclass: 5.6.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 15.8 +/- 15.1 Average RMSD (Å) : 0.843 +/- 0.387 Consensus geometry
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Consensus Sequence: | XXcPpXXhh |
(φψ)-conformation: | aabaappbb |
Pattern: | x | x | [ailv] | [aekl] | x | x | [DHN] | [AP] | [EHKNRST] | x | [adp] | [ilv] | [gily] |
Conservation: | -0.868 | -1.060 | -0.174 | -0.340 | -0.737 | -0.359 | 1.264 | 2.629 | -0.090 | -0.290 | 0.361 | 0.341 | -0.677 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j93_A_229 | 1j93 | A | 237 | 249 | DSVKLTHPNLPLI | HHHHHHSTT--EE | aaaaaabaaxwbb |
1jz7_A_466 | 1jz7 | A | 473 | 485 | RWIKSVDPSRPVQ | HHHHHH-TTS-EE | aaaaaabaabxbb |
1n8y_C_461 | 1n8y | C | 461 | 473 | WDQLFRNPHQALL | HHHH--STT--EE | aaaaxabaaxbbb |
1nij_A_167 | 1nij | A | 171 | 183 | ERLARINARAPVY | HHHHHH-SSS-EE | aaaaaabaaxxbb |
1pvd_A_417 | 1pvd | A | 427 | 439 | FAAEEIDPKKRVI | HHHHHH-TT--EE | aaaaaabaaxbbb |
1qe5_A_177 | 1qe5 | A | 181 | 193 | ELAHRVDPTLPEG | HHHHHH-TT--EE | aaaaaabaapxbb |
1tyf_A_37 | 1tyf | A | 48 | 60 | LFLEAENPEKDIY | HHHHHH-SSS-EE | aaaaaabaaxpbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jz7_A_466 | 1jz7 | A | DMSDIMETHYL SULFOXIDE | A - 466 |
1jz7_A_466 | 1jz7 | A | DMSDIMETHYL SULFOXIDE | P - 480 |
1jz7_A_466 | 1jz7 | A | DMSDIMETHYL SULFOXIDE | S - 481 |
1jz7_A_466 | 1jz7 | A | DMSDIMETHYL SULFOXIDE | R - 482 |
1pvd_A_417 | 1pvd | A | TPPTHIAMINE DIPHOSPHATE | I - 442 |
1pvd_A_417 | 1pvd | A | TPPTHIAMINE DIPHOSPHATE | G - 443 |
1pvd_A_417 | 1pvd | A | MGMAGNESIUM ION | G - 443 |
1qe5_A_177 | 1qe5 | A | PO4PHOSPHATE ION | Y - 195 |
Clusters included in this Subclass |
CLUSTER: HE.6.57 |