Information on SUBCLASS 5.8.3 |
Subclass Accession number: 5769
Subclass: 5.8.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 14.9 +/- 14.3 Average RMSD (Å) : 0.875 +/- 0.189 Consensus geometry
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Consensus Sequence: | XphpXGphh |
(φψ)-conformation: | aapbpgpbb |
Pattern: | x | [DQRS] | x | [AMVY] | [ADKR] | x | [AILT] | [AL] | [PRS] | [DRTY] | [ILV] | [KQSY] | [EP] | [G] | [ADQT] | [LMY] | [ILV] | [AFIL] | x |
Conservation: | -0.838 | -0.293 | -0.717 | -0.475 | -0.565 | -0.565 | -0.429 | 0.452 | -0.003 | -0.974 | 0.886 | -0.429 | 0.778 | 3.342 | -0.565 | 0.328 | 0.959 | -0.384 | -0.506 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bg6_*_88 | 1bg6 | - | 89 | 107 | ASIAANIASYISEGQLIIL | HHHHHHHGGG--TT-EEEE | aaaaaaaaaaxbpgxbbbx |
1h2b_A_169 | 1h2b | A | 174 | 192 | YRAVKKAARTLYPGAYVAI | HHHHHHHHTT--TT-EEEE | aaaaaaaaaaxbxgxbbxb |
1qgu_A_382 | 1qgu | A | 382 | 400 | NDDYDRTLPDLKEGTLLFD | HHHHHHHGGG--TT-EEEE | aaaaaaaaaabxpvxxbbb |
2uag_A_390 | 2uag | A | 391 | 409 | EQAMRLLAPRVQPGDMVLL | HHHHHHHGGG--TT-EEEE | aaaaaaaaaaxbpgxbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h2b_A_169 | 1h2b | A | NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) | A - 169 |
1h2b_A_169 | 1h2b | A | ZNZINC ION | A - 169 |
1h2b_A_169 | 1h2b | A | OCAOCTANOIC ACID (CAPRYLIC ACID) | T - 172 |
1h2b_A_169 | 1h2b | A | NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) | T - 172 |
1h2b_A_169 | 1h2b | A | NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) | V - 193 |
Clusters included in this Subclass |
CLUSTER: HE.7.193 |
CLUSTER: HE.9.45 |