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Information on SUBCLASS 5.35.1
Subclass Accession number: 5814
Subclass: 5.35.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 15.7 +/- 14.4
Average RMSD (Å) : 1.060 +/- 0.321

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: phGhphphX
(φψ)-conformation: aagpappbb
Pattern: [lmt][LMV]x[DKQRT][AFLW][G]x[KPQT][ADGPV][eqy]xxxx
Conservation:-0.2580.963-0.649-0.138-0.3603.136-0.2640.007-0.717-0.1900.067-0.335-0.819-0.443
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d7y_A_171d7y   A2538ELRQAGYQGLITVVHHHHHT--S-EEEEaaaaagxaxxbbbb
1gvh_A_2721gvh   A280293TLAKAGHTAQVNWFHHHHHT--S-EEEEaaaaavpaxpbbbb
1pvd_A_4541pvd   A456469TMIRWGLKPYLFVLHHHHTT---EEEEEaaaaavxaxbbxbx
1qpb_A_4981qpb   A498511LLPTFGAKDYETHRHHHHTT-SS--EEEaaaaavxabbbbbb
1v8f_A_1471v8f   A156169MVRDLGFPVEVVGVHHHHHT---EEEEEaaaaavxabxxxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d7y_A_171d7y   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 17
1d7y_A_171d7y   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 18
1d7y_A_171d7y   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 19
1d7y_A_171d7y   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 38
1d7y_A_171d7y   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 39
1gvh_A_2721gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 272
1gvh_A_2721gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 273
1pvd_A_4541pvd   A     TPPTHIAMINE DIPHOSPHATE L - 469
1pvd_A_4541pvd   A     MGMAGNESIUM ION L - 469
1pvd_A_4541pvd   A     MGMAGNESIUM ION N - 470
1v8f_A_1471v8f   A     144TRIS-HYDROXYMETHYL-METHYL-AMMONIUM Q - 149
1v8f_A_1471v8f   A     GOLGLYCEROL V - 169
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvh_A_2721gvh   A AC1FAD BINDING SITE FOR CHAIN AT - 272
1gvh_A_2721gvh   A AC4NA BINDING SITE FOR CHAIN AH - 294

Clusters included in this Subclass
CLUSTER: HE.5.225
CLUSTER: HE.6.183