Information on SUBCLASS 6.39.1 |
Subclass Accession number: 5904
Subclass: 6.39.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003676 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 0.0 +/- 0.0 Average RMSD (Å) : 1.400 +/- 0.346 Consensus geometry
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Consensus Sequence: | XppXpXXpXX |
(φψ)-conformation: | aababbpabb |
Pattern: | x | [AQS] | x | x | x | [HSY] | [NQR] | x | [DHR] | [CRY] | x | [NST] | x | [NTV] |
Conservation: | -0.270 | 0.630 | -0.450 | -0.630 | -1.170 | 1.350 | 1.529 | -0.630 | 0.630 | -0.450 | -1.350 | 1.709 | -0.810 | -0.090 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dbq_A_223 | 1dbq | A | 230 | 243 | MQQILSQPHRPTAV | HHHHHTSSS--SEE | aaaaaaxabbxabb |
1dyt_A_28 | 1dyt | A | 28 | 41 | RAINNYRWRCKNQN | HHHHTTSSS--SEE | aaaaaababxxabb |
1o6z_A_109 | 1o6z | A | 125 | 138 | SSLDEHNDDYISLT | HHHHTT-S--EEEE | aaaaaababbxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dyt_A_28 | 1dyt | A | FEFE (III) ION | R - 34 |
1dyt_A_28 | 1dyt | A | CITCITRIC ACID | R - 34 |
1dyt_A_28 | 1dyt | A | FEFE (III) ION | R - 36 |
1dyt_A_28 | 1dyt | A | CITCITRIC ACID | R - 36 |
1dyt_A_28 | 1dyt | A | FEFE (III) ION | C - 37 |
1dyt_A_28 | 1dyt | A | CITCITRIC ACID | C - 37 |
1dyt_A_28 | 1dyt | A | CITCITRIC ACID | K - 38 |
1dyt_A_28 | 1dyt | A | FEFE (III) ION | N - 39 |
1dyt_A_28 | 1dyt | A | CITCITRIC ACID | N - 39 |
1dyt_A_28 | 1dyt | A | CITCITRIC ACID | Q - 40 |
1dyt_A_28 | 1dyt | A | CITCITRIC ACID | N - 41 |
1dyt_A_28 | 1dyt | A | CITCITRIC ACID | L - 44 |
1o6z_A_109 | 1o6z | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | I - 119 |
1o6z_A_109 | 1o6z | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | D - 122 |
1o6z_A_109 | 1o6z | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | I - 123 |
1o6z_A_109 | 1o6z | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | T - 138 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1dyt_A_28 | 1dyt | A | ASAPOTENTIAL ACTIVE SITE CHAIN A | K - 38 |
Clusters included in this Subclass |
CLUSTER: HE.7.168 |