ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 7.6.1

Subclass Accession number: 5939
Subclass: 7.6.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 3.7 +/- 5.2
Average RMSD (Å) : 0.733 +/- 0.208

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	XXcXhpphpXh
(φψ)-conformation:	aalaaaababb

Pattern:	[AIV]	[EKQ]	[EGQ]	[IL]	[ADR]	[AKV]	x	[DG]	[KLT]	[ALY]	[DHK]	[KNT]	[CLV]	[DST]	x	[AIV]	x	[STY]
Conservation:	0.415	1.420	-0.159	2.137	-1.164	-0.877	-0.733	1.847	-1.021	-0.877	-0.016	0.128	0.271	0.271	-0.303	0.415	-1.308	-0.446

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gpm_A_418	1gpm	A	432	449	IEELRKADLYDKVSQAFT	HHHHHHTT-GGGSSEEEE	aaaaaaalaaaababbbb
1kfw_A_36	1kfw	A	36	53	AKQLDVSGTAKNLTHINY	HHHHHHTS-GGG-SEEEE	aaaaaaavaaaababbxx
1vi9_A_57	1vi9	A	64	81	VQGIAAIDKLHTCDAVLS	HHHHHHTT-GGG--EEEE	aaaaaaavaaaaxabbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kfw_A_36	1kfw	A	GOLGLYCEROL	L - 39
1kfw_A_36	1kfw	A	GOLGLYCEROL	D - 40
1kfw_A_36	1kfw	A	GOLGLYCEROL	V - 41
1kfw_A_36	1kfw	A	GOLGLYCEROL	S - 42
1kfw_A_36	1kfw	A	GOLGLYCEROL	G - 43
1kfw_A_36	1kfw	A	GOLGLYCEROL	T - 44
1kfw_A_36	1kfw	A	GOLGLYCEROL	A - 45
1kfw_A_36	1kfw	A	GOLGLYCEROL	K - 46
1kfw_A_36	1kfw	A	GOLGLYCEROL	N - 47
1kfw_A_36	1kfw	A	GOLGLYCEROL	Y - 53
1kfw_A_36	1kfw	A	GOLGLYCEROL	F - 55
1kfw_A_36	1kfw	A	GOLGLYCEROL	G - 56
1vi9_A_57	1vi9	A	MSESELENOMETHIONINE	P - 57
1vi9_A_57	1vi9	A	MSESELENOMETHIONINE	S - 58
1vi9_A_57	1vi9	A	MSESELENOMETHIONINE	H - 59
1vi9_A_57	1vi9	A	CSD3-SULFINOALANINE	H - 59
1vi9_A_57	1vi9	A	MSESELENOMETHIONINE	L - 60
1vi9_A_57	1vi9	A	CSD3-SULFINOALANINE	I - 63
1vi9_A_57	1vi9	A	MSESELENOMETHIONINE	T - 75
1vi9_A_57	1vi9	A	MSESELENOMETHIONINE	D - 77
1vi9_A_57	1vi9	A	MSESELENOMETHIONINE	L - 80

Clusters included in this Subclass

CLUSTER: HE.7.183