ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.2

Subclass Accession number: 60
Subclass: 2.1.2
Type: HA beta-beta hairpin
DB: ArchDB-KI

Number of loops: 12

Average sequence ID (%) : 15.6 +/- 2.0
Average RMSD (Å) : 0.40 +/- 0.30

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXpGpX
(φψ)-conformation:	bbllbb

Pattern:	x	x	x	[DENQRS]	{GL}	x	x
Conservation:	-1.000	-0.926	-0.682	1.044	1.453	-0.244	-0.645

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
16pk_*_29	16pk	-	29	34	.VKNGKI	.EETTEE	.bblvbx
1byg_A_208	1byg	A	212	218	GDYRGNK	EEETTEE	bbblgxp
1cke_A_69	1cke	A	72	78	VSTNGNL	EEETTEE	bbblvbx
1cke_A_77	1cke	A	80	86	VILEGED	EEETTEE	bxblvbx
1gky_*_67	1gky	-	71	77	AQFSGNY	EEETTEE	bbblvbb
1hcl_*_66	1hcl	-	70	76	IHTENKL	EEETTEE	bbbllbb
1p38_*_8	1p38	-	11	17	QELNKTI	EEETTEE	bbblvbx
1php_*_26	1php	-	26	31	.MEQGAI	.EETTEE	.bbvvbx
1qpg_*_129	1qpg	-	130	136	RKVDGQK	EEETTEE	bxblgxx
1vpe_*_26	1vpe	-	26	31	.VKDGVV	.EETTEE	.bblvbx
2cmk_A_79	2cmk	A	80	86	VILEGED	EEETTEE	bbblvbx
2src_*_392	2src	-	394	400	VGENLVC	EEGGGEE	bbpvlxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gky_*_67	1gky	*	5GPGUANOSINE-5'-MONOPHOSPHATE	E - 69
1gky_*_67	1gky	*	5GPGUANOSINE-5'-MONOPHOSPHATE	W - 70
1gky_*_67	1gky	*	5GPGUANOSINE-5'-MONOPHOSPHATE	A - 71
1gky_*_67	1gky	*	5GPGUANOSINE-5'-MONOPHOSPHATE	F - 73
1gky_*_67	1gky	*	5GPGUANOSINE-5'-MONOPHOSPHATE	Y - 78
1gky_*_67	1gky	*	5GPGUANOSINE-5'-MONOPHOSPHATE	G - 79
1gky_*_67	1gky	*	5GPGUANOSINE-5'-MONOPHOSPHATE	S - 80

Clusters included in this Subclass

CLUSTER: HA.1.4

CLUSTER: HA.2.0