ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.2.14

Subclass Accession number: 6059
Subclass: 2.2.14

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 18.7 +/- 16.7
Average RMSD (Å) : 0.533 +/- 0.141

Consensus geometry

d (Å): 3

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XpXXGX
(φψ)-conformation:	bbaaeb

Pattern:	x	x	[ACGIKTV]	[AFGKLV]	x	[DGNST]	x	x	[G]	[cikltv]	x
Conservation:	-0.250	-0.287	-0.454	-0.472	-0.499	0.365	-0.531	-0.289	2.924	-0.285	-0.222

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b6r_A_221	1b6r	A	225	235	MECFVTPQGLL	EEEEEETTEEE	bxbbxbaaexb
1cs6_A_365	1cs6	A	368	378	QCVAENKHGTV	EEEEEETTEEE	bbbbbbaaebb
1ex0_A_155	1ex0	A	160	170	YVAVWTPYGVL	EEEEEETTEEE	bbbbxbaaebx
1g1c_A_75	1g1c	A	78	88	MVKAINIAGET	EEEEEETTEEE	bbbbbbaaebb
1h0h_A_899	1h0h	A	899	909	KVILESVRGKL	EEEEEETTEEE	xbbbbbaaebb
1lld_A_275	1lld	A	278	288	VPTLLNRQGVN	EEEEEETTEEE	bwbxbbaaebb
1obb_A_389	1obb	A	392	402	VPALVDKNGIH	EEEEEETTEEE	bwbxbbaaexb
1oxx_K_245	1oxx	K	247	257	LEGKVTNEGVV	EEEEEETTEEE	bbbxxbaaexx
1r0p_A_1076	1r0p	A	1082	1092	EVIGRGHFGCV	EEEEEETTEEE	bxabbbaaebb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1obb_A_389	1obb	A	CSWCYSTEINE-S-DIOXIDE	E - 391
1oxx_K_245	1oxx	K	IODIODIDE ION	K - 250
1oxx_K_245	1oxx	K	IODIODIDE ION	T - 252
1oxx_K_245	1oxx	K	IODIODIDE ION	N - 253
1oxx_K_245	1oxx	K	IODIODIDE ION	E - 254
1oxx_K_245	1oxx	K	IODIODIDE ION	G - 255
1oxx_K_245	1oxx	K	IODIODIDE ION	V - 256
1r0p_A_1076	1r0p	A	KSAK-252A	I - 1084
1r0p_A_1076	1r0p	A	KSAK-252A	G - 1085
1r0p_A_1076	1r0p	A	KSAK-252A	R - 1086
1r0p_A_1076	1r0p	A	KSAK-252A	G - 1087
1r0p_A_1076	1r0p	A	KSAK-252A	F - 1089
1r0p_A_1076	1r0p	A	KSAK-252A	V - 1092

Clusters included in this Subclass

CLUSTER: HA.1.74

CLUSTER: HA.3.71