ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 2.3.10

Subclass Accession number: 6111
Subclass: 2.3.10

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 16.4 +/- 17.0
Average RMSD (Å) : 0.382 +/- 0.087

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	XhcpXX
(φψ)-conformation:	bbeabb

Pattern:	[CGKLTV]	x	[acfivy]	[dgn]	[DENQSY]	[kltv]	[cdnstv]
Conservation:	-1.024	-0.495	-0.020	1.953	0.605	-0.577	-0.442

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1brt_*_2	1brt	-	6	12	GQENSTS	EEETTEE	ebbeabx
1cf2_O_286	1cf2	O	286	292	TVVDNEI	EEETTEE	bbbeabb
1dpj_A_78	1dpj	A	89	95	LSIGDLT	EEETTEE	bbbeaxb
1f2q_A_147	1f2q	A	153	159	GKVWQLD	EEETTEE	bxbeabb
1fnl_A_150	1fnl	A	156	162	GLVGSKN	EEETTEE	bbbeaxx
1g29_1_2	1g29	1	11	17	KVFGEVT	EEETTEE	bbbeaxb
1i2k_A_241	1i2k	A	245	251	CACGDVS	EEETTEE	abbeaxb
1l4i_A_150	1l4i	A	155	161	LKAGNKS	EEETTEE	xbbeaxx
1qdm_A_83	1qdm	A	94	100	VTVGDLV	EEETTEE	xbbeabb
1uv0_A_19	1uv0	A	19	25	KAYGSHC	EEETTEE	bxbeabb
2fcb_A_152	2fcb	A	158	164	GNIGYTL	EEETTEE	bbbeabx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dpj_A_78	1dpj	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 84
1dpj_A_78	1dpj	A	MANALPHA-D-MANNOSE	Q - 86
1dpj_A_78	1dpj	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 86
1dpj_A_78	1dpj	A	MANALPHA-D-MANNOSE	P - 97
1dpj_A_78	1dpj	A	MANALPHA-D-MANNOSE	K - 98
1dpj_A_78	1dpj	A	MANALPHA-D-MANNOSE	Q - 99
1dpj_A_78	1dpj	A	MANALPHA-D-MANNOSE	D - 100
1dpj_A_78	1dpj	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 100
1f2q_A_147	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 148
1g29_1_2	1g29	1	DOXDIOXANE	W - 10
1g29_1_2	1g29	1	DOXDIOXANE	K - 11
1g29_1_2	1g29	1	DOXDIOXANE	V - 12
1g29_1_2	1g29	1	DOXDIOXANE	F - 13
1g29_1_2	1g29	1	DOXDIOXANE	G - 14
1g29_1_2	1g29	1	DOXDIOXANE	E - 15
1g29_1_2	1g29	1	POPPYROPHOSPHATE 2-	A - 18
1g29_1_2	1g29	1	POPPYROPHOSPHATE 2-	V - 19
1uv0_A_19	1uv0	A	ZNZINC ION	H - 24

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uv0_A_19	1uv0	A	AC2ZN BINDING SITE FOR CHAIN A	H - 24

Clusters included in this Subclass

CLUSTER: HA.1.28