Information on SUBCLASS 2.4.3 |
Subclass Accession number: 6130
Subclass: 2.4.3 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 13.7 +/- 15.8 Average RMSD (Å) : 0.475 +/- 0.198 Consensus geometry
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Consensus Sequence: | XXXcXh |
(φψ)-conformation: | bbplbb |
Pattern: | x | [agqrs] | x | [DG] | x | [apvy] |
Conservation: | -0.525 | -0.208 | -0.674 | 2.009 | -0.370 | -0.232 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ava_A_388 | 1ava | A | 393 | 398 | HGNDYA | EETTEE | bbxlbb |
1fpz_A_52 | 1fpz | A | 52 | 57 | KFKDVR | EETTEE | bbpvxb |
1gm6_A_67 | 1gm6 | A | 78 | 83 | VGDGVY | EETTEE | abxvbb |
1hw1_A_61 | 1hw1 | A | 63 | 68 | IQHGKP | EETTEE | bbpvbp |
1ihn_A_14 | 1ihn | A | 15 | 20 | CRFGSV | EETTEE | bbpvbb |
1j1y_A_12 | 1j1y | A | 16 | 21 | LAPGEA | EETTEE | bbpvbb |
1koi_A_67 | 1koi | A | 77 | 82 | ESLGKY | EETTEE | abxvbb |
1nnx_A_38 | 1nnx | A | 50 | 55 | ISDDLY | EETTEE | abxvbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gm6_A_67 | 1gm6 | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 74 |
1gm6_A_67 | 1gm6 | A | GOLGLYCEROL | C - 75 |
1gm6_A_67 | 1gm6 | A | NAGN-ACETYL-D-GLUCOSAMINE | D - 76 |
1gm6_A_67 | 1gm6 | A | GOLGLYCEROL | V - 85 |
1ihn_A_14 | 1ihn | A | MSESELENOMETHIONINE | T - 21 |
1ihn_A_14 | 1ihn | A | MSESELENOMETHIONINE | Y - 22 |
1koi_A_67 | 1koi | A | HEMPROTOPORPHYRIN IX CONTAINING FE | F - 68 |
1koi_A_67 | 1koi | A | HEMPROTOPORPHYRIN IX CONTAINING FE | Y - 69 |
1koi_A_67 | 1koi | A | HEMPROTOPORPHYRIN IX CONTAINING FE | D - 70 |
1koi_A_67 | 1koi | A | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 72 |
1koi_A_67 | 1koi | A | HEMPROTOPORPHYRIN IX CONTAINING FE | N - 85 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gm6_A_67 | 1gm6 | A | CAVODOUR-BINDING CAVITY | A - 73 |
1gm6_A_67 | 1gm6 | A | CAVODOUR-BINDING CAVITY | C - 75 |
1gm6_A_67 | 1gm6 | A | NAGNAG BINDING SITE FOR CHAIN A | D - 76 |
1gm6_A_67 | 1gm6 | A | CAVODOUR-BINDING CAVITY | V - 85 |
Clusters included in this Subclass |
CLUSTER: HA.1.51 |
CLUSTER: HA.3.142 |
CLUSTER: HA.3.157 |