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Information on SUBCLASS 2.4.3
Subclass Accession number: 6130
Subclass: 2.4.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 13.7 +/- 15.8
Average RMSD (Å) : 0.475 +/- 0.198

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXcXh
(φψ)-conformation: bbplbb
Pattern: x[agqrs]x[DG]x[apvy]
Conservation:-0.525-0.208-0.6742.009-0.370-0.232
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ava_A_3881ava   A393398HGNDYAEETTEEbbxlbb
1fpz_A_521fpz   A5257KFKDVREETTEEbbpvxb
1gm6_A_671gm6   A7883VGDGVYEETTEEabxvbb
1hw1_A_611hw1   A6368IQHGKPEETTEEbbpvbp
1ihn_A_141ihn   A1520CRFGSVEETTEEbbpvbb
1j1y_A_121j1y   A1621LAPGEAEETTEEbbpvbb
1koi_A_671koi   A7782ESLGKYEETTEEabxvbb
1nnx_A_381nnx   A5055ISDDLYEETTEEabxvbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gm6_A_671gm6   A     NAGN-ACETYL-D-GLUCOSAMINE V - 74
1gm6_A_671gm6   A     GOLGLYCEROL C - 75
1gm6_A_671gm6   A     NAGN-ACETYL-D-GLUCOSAMINE D - 76
1gm6_A_671gm6   A     GOLGLYCEROL V - 85
1ihn_A_141ihn   A     MSESELENOMETHIONINE T - 21
1ihn_A_141ihn   A     MSESELENOMETHIONINE Y - 22
1koi_A_671koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 68
1koi_A_671koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 69
1koi_A_671koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 70
1koi_A_671koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 72
1koi_A_671koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 85
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gm6_A_671gm6   A CAVODOUR-BINDING CAVITYA - 73
1gm6_A_671gm6   A CAVODOUR-BINDING CAVITYC - 75
1gm6_A_671gm6   A NAGNAG BINDING SITE FOR CHAIN AD - 76
1gm6_A_671gm6   A CAVODOUR-BINDING CAVITYV - 85

Clusters included in this Subclass
CLUSTER: HA.1.51
CLUSTER: HA.3.142
CLUSTER: HA.3.157