ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.13.1

Subclass Accession number: 6390
Subclass: 5.13.1

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 11

Average sequence ID (%) : 19.5 +/- 19.4
Average RMSD (Å) : 0.964 +/- 0.311

Consensus geometry

d (Å): 9

delta (°): 135-180

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	pXGXXXXXX
(φψ)-conformation:	bbeapppbb

Pattern:	x	[almv]	[qrt]	x	[DG]	[ADNQST]	x	[akt]	x	x	x
Conservation:	-0.748	0.124	0.422	-0.577	2.773	0.023	-0.468	0.084	-0.477	-0.802	-0.353

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gtf_A_19	1gtf	A	23	33	GLTRGADTRFH	EEE-SSS--EE	xbxxeabbbxa
1ifr_A_468	1ifr	A	470	480	KRQNGDDPLLT	EEEETTS--EE	bbbbeaxwxbb
1juh_A_283	1juh	A	284	294	VVQIGDYAATE	EEEETTS--EE	xbbbeaxxpbx
1juh_A_81	1juh	A	85	95	WAQSGNETQQT	EEEETTS--EE	bbbbeaxxxbb
1mx1_A_1525	1mx1	A	1526	1536	YLQIGANTQAA	EEEEESS-EEE	bbxbeabbbxb
1pz7_A_122	1pz7	A	124	134	SLQVGNEAPIT	EEEETTS--EE	bbbbeaxxpxb
1qba_*_151	1qba	-	151	161	YATSGDAKPKM	EEE-TTS--EE	bbbbeapxxbx
1r0u_A_62	1r0u	A	65	75	VMRSGAVKMNQ	EEEEESSBEEE	bbbbeabbbbx
1wap_A_19	1wap	A	23	33	GLTRGTDTKFH	EEE-SSS--EE	xbxxeaxbbxa
2fbj_H_199	2fbj	H	203	213	SVQHDSNPVQE	EEEETTS--EE	bbbxeaxpxbb
2kin_A_38	2kin	A	38	48	TVVIGQGKPYV	EEEETTS--EE	bbbbeaxxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	V - 21
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	I - 22
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	G - 23
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	L - 24
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	T - 25
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	R - 26
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	G - 27
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	A - 28
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	D - 29
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	T - 30
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	R - 31
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	H - 33
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	H - 34
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	S - 35
1gtf_A_19	1gtf	A	TRPTRYPTOPHAN	E - 36
1ifr_A_468	1ifr	A	GOLGLYCEROL	Y - 481
1juh_A_81	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 83
1juh_A_81	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 85
1juh_A_81	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 89
1juh_A_81	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 90
1juh_A_81	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 97
1juh_A_283	1juh	A	EDO1,2-ETHANEDIOL	L - 295
1r0u_A_62	1r0u	A	GOLGLYCEROL	V - 65
1r0u_A_62	1r0u	A	GOLGLYCEROL	R - 67
1r0u_A_62	1r0u	A	GOLGLYCEROL	Q - 75
1r0u_A_62	1r0u	A	GOLGLYCEROL	F - 77
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	V - 21
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	I - 22
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	G - 23
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	L - 24
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	T - 25
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	R - 26
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	G - 27
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	T - 28
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	D - 29
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	T - 30
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	K - 31
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	H - 33
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	H - 34
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	S - 35
1wap_A_19	1wap	A	LTRL-TRYPTOPHAN	E - 36
2fbj_H_199	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	S - 203
2fbj_H_199	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	V - 204
2fbj_H_199	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	Q - 205
2fbj_H_199	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	V - 211

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gtf_A_19	1gtf	A	AC1TRP BINDING SITE FOR CHAIN A	G - 23
1gtf_A_19	1gtf	A	AC2TRP BINDING SITE FOR CHAIN B	T - 25
1gtf_A_19	1gtf	A	AC2TRP BINDING SITE FOR CHAIN B	T - 30

Clusters included in this Subclass

CLUSTER: HA.4.91

CLUSTER: HA.6.41