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Information on SUBCLASS 5.20.1
Subclass Accession number: 6398
Subclass: 5.20.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 13.0 +/- 15.4
Average RMSD (Å) : 0.871 +/- 0.359

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXXXcXppX
(φψ)-conformation: bbpplbabb
Pattern: [altv][ehkqt][fiptv]x[fgptv][DGNQ][AGST][DKQT][krt][aitv][fivy]
Conservation:-0.302-0.816-0.967-0.928-1.5881.2361.5550.7750.3190.4570.260
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e1a_A_2701e1a   A273283LHFKPQTKTIFEEE-TTSSEEEbbxxpvbaxbx
1hi9_A_2381hi9   A238248TEIKTGTTTVQEEE-TTSSEEEbbxxpvbabbb
1j7x_A_2451j7x   A247257VFPFGDTQLSVEEE-TTSSEEEbbxxpvbabbb
1mu5_A_1271mu5   A130140ETSPVNSKRIYEEE-TT-SEEEbbbppvxabbb
1oac_A_371oac   A3949VKVKPGAQTAIEEE-TT-SEEEbbbbxvxabbb
1uyp_A_2401uyp   A242252AQTFFGTDRVVEEE-BS-SSEEpbbxxvbaxxb
2h1p_H_3472h1p   H349359ATINSNGDKTYEEE-STT--EEbbbxxlpabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e1a_A_2701e1a   A     CACALCIUM ION S - 271
1e1a_A_2701e1a   A     CACALCIUM ION N - 272
1e1a_A_2701e1a   A     CACALCIUM ION L - 273
1e1a_A_2701e1a   A     CACALCIUM ION H - 274
1e1a_A_2701e1a   A     CACALCIUM ION F - 275
1j7x_A_2451j7x   A     MSESELENOMETHIONINE S - 245
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e1a_A_2701e1a   A DFPDFP BINDING SITES - 271
1e1a_A_2701e1a   A AC2CA BINDING SITE FOR CHAIN AL - 273
1e1a_A_2701e1a   A AC2CA BINDING SITE FOR CHAIN AH - 274
1uyp_A_2401uyp   A AC2SO4 BINDING SITE FOR CHAIN AT - 248
1uyp_A_2401uyp   A AC2SO4 BINDING SITE FOR CHAIN AD - 249
1uyp_A_2401uyp   A AC2SO4 BINDING SITE FOR CHAIN AR - 250

Clusters included in this Subclass
CLUSTER: HA.6.52