Information on SUBCLASS 5.23.1 |
Subclass Accession number: 6402
Subclass: 5.23.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 17.9 +/- 23.0 Average RMSD (Å) : 0.583 +/- 0.183 Consensus geometry
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Consensus Sequence: | XXppXXppX |
(φψ)-conformation: | bbppglabb |
Pattern: | [LMWY] | [sv] | [av] | x | [fit] | [STY] | [DEKQST] | [EGNS] | [ADGS] | [EGKQT] | [ay] | x | x |
Conservation: | 1.814 | 0.058 | 0.026 | -0.652 | -0.679 | 0.749 | -0.008 | 0.774 | 0.229 | -0.770 | 1.336 | -1.657 | -1.217 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dsf_H_45 | 1dsf | H | 47 | 59 | WVATISDGGTYID | EEEEE-GGGS-EE | xabbbxxvvabbb |
1erj_A_633 | 1erj | A | 634 | 646 | LSVATTQNDEYIL | EEEEE-GGG-EEE | abbbbxpvvabbb |
1f4x_H_45 | 1f4x | H | 47 | 59 | WVAFISSGGGRTS | EEEEE-GGG--EE | xabbbxpvvabbb |
1nu6_A_457 | 1nu6 | A | 457 | 469 | YSVSFSKEAKYYQ | EEEEE-GGGSEEE | bbbbxxxvlabbb |
1op3_H_45 | 1op3 | H | 47 | 59 | WVASISTSSTYRD | EEEEE-GGG--EE | xabbbxpvlabbb |
1sek_*_227 | 1sek | - | 229 | 241 | MIEMSYEGDQASM | EEEEEBGGGSEEE | bbbbbxpgvabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1f4x_H_45 | 1f4x | H | MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE | F - 50 |
1f4x_H_45 | 1f4x | H | MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE | S - 53 |
1op3_H_45 | 1op3 | H | MANALPHA-D-MANNOSE | S - 52 |
Clusters included in this Subclass |
CLUSTER: HA.5.121 |
CLUSTER: HA.7.120 |