Logo
Information on SUBCLASS 5.23.1
Subclass Accession number: 6402
Subclass: 5.23.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 17.9 +/- 23.0
Average RMSD (Å) : 0.583 +/- 0.183

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXppXXppX
(φψ)-conformation: bbppglabb
Pattern: [LMWY][sv][av]x[fit][STY][DEKQST][EGNS][ADGS][EGKQT][ay]xx
Conservation:1.8140.0580.026-0.652-0.6790.749-0.0080.7740.229-0.7701.336-1.657-1.217
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dsf_H_451dsf   H4759WVATISDGGTYIDEEEEE-GGGS-EExabbbxxvvabbb
1erj_A_6331erj   A634646LSVATTQNDEYILEEEEE-GGG-EEEabbbbxpvvabbb
1f4x_H_451f4x   H4759WVAFISSGGGRTSEEEEE-GGG--EExabbbxpvvabbb
1nu6_A_4571nu6   A457469YSVSFSKEAKYYQEEEEE-GGGSEEEbbbbxxxvlabbb
1op3_H_451op3   H4759WVASISTSSTYRDEEEEE-GGG--EExabbbxpvlabbb
1sek_*_2271sek   -229241MIEMSYEGDQASMEEEEEBGGGSEEEbbbbbxpgvabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f4x_H_451f4x   H     MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE F - 50
1f4x_H_451f4x   H     MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE S - 53
1op3_H_451op3   H     MANALPHA-D-MANNOSE S - 52

Clusters included in this Subclass
CLUSTER: HA.5.121
CLUSTER: HA.7.120