Information on SUBCLASS 5.45.1 |
Subclass Accession number: 6425
Subclass: 5.45.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005507 (>75 %) GO:0008471 (>75 %) GO:0016679 (>75 %) GO:0016682 (>75 %) GO:0046914 (>75 %) SCOP : 49502 (>75 %) 49503 (>75 %) 49550 (>75 %) |
Number of loops: 2 Average sequence ID (%) : 60.9 +/- 0.0 Average RMSD (Å) : 0.100 +/- 0.000 Consensus geometry
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Consensus Sequence: | VSPDGFXRp |
(φψ)-conformation: | bbaagppbp |
Pattern: | [AV] | [A] | [DS] | [L] | [TV] | [IV] | [AT] | [N] | [A] | [AP] | [V] | [S] | [P] | [D] | [G] | [F] | x | [R] | [DQ] | [A] | [IV] | [V] | [V] |
Conservation: | -1.240 | 0.056 | -0.916 | 0.056 | -1.078 | -0.268 | -1.078 | 1.353 | 0.056 | -1.078 | 0.056 | 0.056 | 2.002 | 1.353 | 1.353 | 1.353 | -1.889 | 0.705 | -0.754 | 0.056 | -0.268 | 0.056 | 0.056 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gyc_A_5 | 1gyc | A | 5 | 27 | AASLVVANAPVSPDGFLRDAIVV | EEEEEEEEEEE-TTS--EEEEEE | bbbbxxbbbwbbaavbxbxbbbb |
1kya_A_5 | 1kya | A | 5 | 27 | VADLTITNAAVSPDGFSRQAVVV | EEEEEEEEEEE-TTS--EEEEEE | bbbbxxbbbxbbaagxxbxbxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gyc_A_5 | 1gyc | A | NAGN-ACETYL-D-GLUCOSAMINE | R - 22 |
1gyc_A_5 | 1gyc | A | NAGN-ACETYL-D-GLUCOSAMINE | D - 23 |
1gyc_A_5 | 1gyc | A | NAGN-ACETYL-D-GLUCOSAMINE | A - 24 |
1kya_A_5 | 1kya | A | PYETETRAHYDROPYRAN | F - 20 |
1kya_A_5 | 1kya | A | NAGN-ACETYL-D-GLUCOSAMINE | Q - 23 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gyc_A_5 | 1gyc | A | NA1NAG BINDING SITE FOR CHAIN A | D - 23 |
Clusters included in this Subclass |
CLUSTER: HA.5.101 |