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Information on SUBCLASS 6.6.1
Subclass Accession number: 6437
Subclass: 6.6.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 12.5 +/- 15.8
Average RMSD (Å) : 1.393 +/- 0.339

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: ppXpXpXhXX
(φψ)-conformation: bbaababpbb
Pattern: xxxx[degpqst][adegknrst]x[DEKNPQS]x[gilp][afgitv]xx
Conservation:-0.526-0.632-0.6911.143-0.409-0.145-1.3242.006-0.5351.333-0.771-0.3430.893
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1apy_B_3021apy   B306318MVYNSEKNQPTEEEE--SS--S-EEExbbbaaxabxxxx
1b3a_A_241b3a   A2840FYTSGKCSNPAVVEE--TTSSS--EEbxxpaaxabwbxb
1cm9_A_281cm9   A3244YPTSQLCSKPGVIEE--TTSSS--EEbxbpaaxabxbbb
1eje_A_1131eje   A113124WTSSRRVKPPRI.EE--SSSSS-EE.bbxxaabapxbx.
1el6_A_1931el6   A200212TVTLDNQQTPTVFEE--TT-SS-EEExbxpaabaxxbxb
1j0p_A_91j0p   A920.LKMDKTKQPVVF.EEE-SSSS-EEE.xxxaababxbxb
1joc_A_13881joc   A13891401NALTPSSKKPVRVEE--TT-SS-EEEbbxbaabaxpbxb
1n9e_A_1221n9e   A126138VVYFGEGEEGYFEEEEE-SSSS-EEEbbxbaaxabxbxb
1nr4_A_241nr4   A2840YQTSEDCSRDAIVEE--TTSSS--EEbxxpaaxaxxbbb
1olz_A_2711olz   A277289VLRSPGLKVPVFYEE--TT-SS-EEEbxbbaababxbxb
1qqg_A_691qqg   A7486KRADSKNKHLVALEE--SS-SSEEEExbbbaababxbbb
1qzz_A_3311qzz   A338350TSGSTTLPFDFSIEE--SS-SS-EEEbbbbaaxabxbbb
1sdj_A_471sdj   A5062LLHSDDSDVRIRYEE--SSSSEEEEExbxbaababbbbb
2cth_A_92cth   A920.LKMEATKQPVVF.EEE-SSSS-EEE.xbxaababxbxb
2viu_A_242viu   A2536LVKTITDDQIEV.EE--SS-S-EEE.xbxbaababbxb.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b3a_A_241b3a   A     AOPPENTYLOXYAMINO-ACETALDEHYDE N - 36
1cm9_A_281cm9   A     MSESELENOMETHIONINE W - 31
1cm9_A_281cm9   A     MSESELENOMETHIONINE V - 43
1cm9_A_281cm9   A     MSESELENOMETHIONINE F - 45
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 9
1j0p_A_91j0p   A     EOHETHANOL L - 9
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 10
1j0p_A_91j0p   A     EOHETHANOL K - 10
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 11
1j0p_A_91j0p   A     EOHETHANOL M - 11
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 12
1j0p_A_91j0p   A     EOHETHANOL D - 12
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 13
1j0p_A_91j0p   A     EOHETHANOL K - 13
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 14
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 15
1j0p_A_91j0p   A     EOHETHANOL K - 15
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 16
1j0p_A_91j0p   A     EOHETHANOL Q - 16
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 17
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 18
1j0p_A_91j0p   A     EOHETHANOL V - 18
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 19
1j0p_A_91j0p   A     EOHETHANOL V - 19
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 20
1j0p_A_91j0p   A     EOHETHANOL F - 20
1joc_A_13881joc   A     ITPPHOSPHORIC ACID MONO-(2,3,4,6-TETRAHYDROXY-5-PHOSPHONOOXY-CYCLOHEXYL) ESTER R - 1400
1joc_A_13881joc   A     ZNZINC ION V - 1401
1n9e_A_1221n9e   A     NAGN-ACETYL-D-GLUCOSAMINE N - 122
1n9e_A_1221n9e   A     NAGN-ACETYL-D-GLUCOSAMINE E - 131
1n9e_A_1221n9e   A     NAGN-ACETYL-D-GLUCOSAMINE K - 141
1sdj_A_471sdj   A     MSESELENOMETHIONINE F - 49
1sdj_A_471sdj   A     MSESELENOMETHIONINE L - 51
1sdj_A_471sdj   A     MSESELENOMETHIONINE R - 61
1sdj_A_471sdj   A     MSESELENOMETHIONINE F - 63
2cth_A_92cth   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 12
2cth_A_92cth   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 13

Clusters included in this Subclass
CLUSTER: HA.7.24
CLUSTER: HA.8.8
CLUSTER: HA.9.14