Logo
Information on SUBCLASS 4.10.1
Subclass Accession number: 666
Subclass: 4.10.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 7.6 +/- 9.6
Average RMSD (Å) : 0.620 +/- 0.175

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXpXXXXh
(φψ)-conformation: bpaabpbb
Pattern: xx[adgnrst][chkrsty]xx[gnpt]x[AFILY]x
Conservation:-1.030-1.0150.023-0.420-0.740-0.4750.5250.4552.3110.366
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_B_18371a9x   B18401849IHRTDKPAFSEEESSSSEEEbbxaabxbbb
1e1a_A_731e1a   A7786QCDRDANQLFEE-SSSSEEEbxxaabxbbx
1gzq_A_351gzq   A3948GWDSDSGTAIEEETTTTEEEbbxaaxpbxb
1hnf_*_1101hnf   -112121SWTCINTTLTEEETTTTEEEbbbaabxbbb
1k32_A_5231k32   A523532SPDRVVLNFSEE-SSSS-EEbxxaabxbbb
1l9x_A_2021l9x   A207216MEGYKYPVYGEEESSS-EEEbbxaaxxbbb
1nez_G_511nez   G5564YMASSHNKITEE-SSS--EEbbxaabbbbb
1qks_A_3001qks   A304313LASHYRPEFIEE-SSSSEEEbbxaabxbbb
1scj_B_3361scj   B339348KQFKYVNAAAEE-SSSSEEEbbxaabxbbx
1utc_A_701utc   A7281IMNPASKVIAEE-SSSSEEEbxpaaxxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_B_18371a9x   B     CYG2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID S - 1849
1a9x_B_18371a9x   B     CYG2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID F - 1850
1e1a_A_731e1a   A     CACALCIUM ION A - 74
1e1a_A_731e1a   A     CACALCIUM ION C - 76
1e1a_A_731e1a   A     CACALCIUM ION Q - 77
1gzq_A_351gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE H - 38
1gzq_A_351gzq   A     TWTDOCOSANE H - 38
1gzq_A_351gzq   A     TWTDOCOSANE G - 39
1gzq_A_351gzq   A     TWTDOCOSANE W - 40
1gzq_A_351gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE A - 47
1gzq_A_351gzq   A     TWTDOCOSANE A - 47
1gzq_A_351gzq   A     TWTDOCOSANE I - 48
1gzq_A_351gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE F - 49
1gzq_A_351gzq   A     TWTDOCOSANE F - 49
1hnf_*_1101hnf   *     NAGN-ACETYL-D-GLUCOSAMINE I - 116
1hnf_*_1101hnf   *     NAGN-ACETYL-D-GLUCOSAMINE N - 117
1nez_G_511nez   G     NAGN-ACETYL-D-GLUCOSAMINE T - 51
1qks_A_3001qks   A     DHEHEME D V - 300
1qks_A_3001qks   A     DHEHEME D A - 301
1qks_A_3001qks   A     DHEHEME D A - 302
1qks_A_3001qks   A     DHEHEME D I - 303
1qks_A_3001qks   A     DHEHEME D L - 304
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gzq_A_351gzq   A AC6TWT BINDING SITE FOR CHAIN AW - 40

Clusters included in this Subclass
CLUSTER: HA.3.219
CLUSTER: HA.4.182
CLUSTER: HA.5.73
CLUSTER: HA.6.68