ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.19.1

Subclass Accession number: 743
Subclass: 5.19.1

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.2 (>75 %)  3.2.1 (>75 %)
GO : GO:0004553 (>50 %)  GO:0016798 (>50 %)  GO:0016997 (>75 %)
SCOP : 50938 (>75 %)  50939 (>75 %)  50940 (>75 %)

Number of loops: 6

Average sequence ID (%) : 34.9 +/- 24.1
Average RMSD (Å) : 0.267 +/- 0.103

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	pSpDXGppW
(φψ)-conformation:	bbaallabb

Pattern:	[fiv]	x	[tvy]	[ST]	[dt]	[D]	x	[GY]	[dkqr]	[NQT]	[FW]	[KQRST]	x
Conservation:	-0.488	-1.048	-0.618	0.395	-0.533	1.770	0.213	0.296	-0.745	-0.060	2.221	-0.480	-0.923

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a2p_A_96	1a2p	A	96	108	IYKTTDHYQTFTK	EEEESSTTS--EE	bbbbaalvabbbx
1eur_*_171	1eur	-	174	186	VATSTDGGLTWSH	EEEESSTTSS-EE	bbbbaavvabbbb
1eur_*_234	1eur	-	238	250	SVYSDDHGRTWRA	EEEESSTTS--EE	xbbbaavvabbbx
1qba_*_841	1qba	-	842	854	IEYSTDGGKQWQR	EEEESSSSSS-EE	bbbbaavvabbbx
1sox_A_379	1sox	A	382	394	VDVSLDGGRTWKV	EEEESBTTSS-EE	bbbbaavvabbbx
2sli_*_568	2sli	-	570	582	FMYSDDHGDNWTY	EEEESSTTSS-EE	bbbbaalvabbbx

Clusters included in this Subclass

CLUSTER: HA.6.41