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PDB code:

Information on SUBCLASS 6.2.1

Subclass Accession number: 764 Subclass: 6.2.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 33 Average sequence ID (%) : 12.0 +/- 13.7 Average RMSD (Å) : 0.591 +/- 0.202 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c2a_A_98	1c2a	A	98	110	CLPSRSRPSRRVC	EEE-SS-TTSEEE	bbxxaabaabbbx
1cwv_A_866	1cwv	A	869	881	TAKSKKFPSYSVS	EEEESSSTT-EEE	bbbxaabaabbbb
1el6_A_143	1el6	A	146	158	YKDHPTDGSKLEV	EEE-SS-TTEEEE	bbxxaabaabbxb
1elv_A_620	1elv	A	622	634	AVQDPNDKTKFYA	EEE-SS-TT-EEE	xbxxaabaabbbx
1em2_A_390	1em2	A	390	402	VLKSASNPRVCTF	EEE-SS-TT-EEE	bbxxaabaabbbb
1ext_A_19	1ext	A	19	31	KYIHPQNNSICCT	EEE-SS-TT-EEE	bbxpaabaabbbx
1f3l_A_495	1f3l	A	502	514	VHKNKKDPRSLIV	EEE-TTSTTSEEE	bbxpaabaabbbb
1f9v_A_420	1f9v	A	423	435	EVTKIQNTAQVHE	EEEEGGGTT-EEE	bbbxaabaabbxb
1gyv_A_715	1gyv	A	721	733	FERSNTNPSVTVI	EEE-SS-TTEEEE	bbxxaabaabbxb
1h54_A_131	1h54	A	139	151	RFLSVAQPELSVQ	EEE-SSSTTEEEE	bbbpaabaaxbbb
1hsk_A_265	1hsk	A	265	277	VEVSTKHAGFMVN	EEE-SS-TT-EEE	bbxpaabaabbxx
1jmx_B_257	1jmx	B	260	272	GLRSPKDPNQIYG	EEE-SS-TTEEEE	bbxxaabaabbbb
1jnr_A_174	1jnr	A	179	191	LLKDNNDPNAVAG	EEE-TT-TTBEEE	xbbxaabaabxae
1jr7_A_21	1jr7	A	23	35	LTPSAQSPRLLEL	EEE-SS-TTEEEE	bbxxaabaabxxb
1lj9_A_74	1lj9	A	76	88	RQEDASNKKIKRI	EEE-SS-TT-EEE	bbxxaabaaxbxx
1lp9_E_124	1lp9	E	127	139	QLKDPRSQDSTLC	EEE-TTSSS-EEE	bbbbaabaaxbbb
1mk4_A_52	1mk4	A	58	70	GFQSQSDPETAYI	EEE-SSSTTEEEE	bbxxaabaabbbb
1mwv_A_371	1mwv	A	371	381	.IPDAFDPSKKH.	.EE-SS-TT-EE.	.xxxaabaabbb.
1mwv_A_673	1mwv	A	675	687	WKPTAADADVFEG	EEE-SS-TTEEEE	bbxxaabaabbbb
1n7v_A_284	1n7v	A	285	297	LVRQTSNPMNAVA	EEE-SS-TTSEEE	bbbpaabaaxbbb
1nrv_A_458	1nrv	A	461	473	LRDSQSNPKAFVL	EEE-SS-TT-EEE	bbxxaabaabbbb
1ntv_A_113	1ntv	A	116	128	IAKDITDHRAFGY	EEE-TT-TTEEEE	bbxxaabaabbbb
1p35_A_239	1p35	A	249	261	TTESSWGKSEKYN	EE--SSSSS--EE	bbxxaabaaxpxb
1p4x_A_205	1p4x	A	206	218	KERSTEDERKILI	EEE-SSSTT-EEE	bbbxaabaaxbxb
1p4x_A_81	1p4x	A	82	94	KVRSKIDERNTYI	EEE-SSSTTSEEE	bbxxaaxaaxbbb
1q2b_A_193	1q2b	A	193	203	.EPSSNNANTGI.	.EE-SS-TT-EE.	.bpxaabaabbb.
1q88_A_273	1q88	A	274	286	GWFDQNEPNCLIL	EEE-SSSTTEEEE	bbxpaabaabxbb
1qxm_A_104	1qxm	A	105	117	IIRNYMNPNLVLQ	EEEESS-TTEEEE	bxbxaabaabbxb
1rdr_*_377	1rdr	-	378	390	FRADEKYPFLIHP	EEE-SS-TTSEEE	bbxxaabaabxxw
1rpy_A_434	1rpy	A	436	448	IRQSETRPGECVL	EEE-SSSTT-EEE	bbxxaabaabbbb
1s3j_A_81	1s3j	A	83	95	RTHNTKDRRVIDL	EEE-SS-TTSEEE	bbxxaabaaxbxb
1tul_*_11	1tul	-	15	27	AQINSEDENVLDF	EEE-SS-TTEEEE	xbxxaabaabbxb
1uxy_*_282	1uxy	-	282	294	AAVHRQQALVLIN	EEE-SS-TTEEEE	bbxpaabaaxxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1em2_A_390	1em2	A	MSESELENOMETHIONINE	V - 390
1em2_A_390	1em2	A	TARD(-)-TARTARIC ACID	S - 393
1em2_A_390	1em2	A	TARD(-)-TARTARIC ACID	S - 395
1em2_A_390	1em2	A	TARD(-)-TARTARIC ACID	N - 396
1em2_A_390	1em2	A	TARD(-)-TARTARIC ACID	V - 399
1em2_A_390	1em2	A	MSESELENOMETHIONINE	F - 402
1em2_A_390	1em2	A	MSESELENOMETHIONINE	V - 403
1em2_A_390	1em2	A	MSESELENOMETHIONINE	W - 404
1em2_A_390	1em2	A	MSESELENOMETHIONINE	I - 405
1em2_A_390	1em2	A	MSESELENOMETHIONINE	L - 406
1f3l_A_495	1f3l	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	R - 510
1hsk_A_265	1hsk	A	FADFLAVIN-ADENINE DINUCLEOTIDE	F - 274
1jmx_B_257	1jmx	B	TRQ2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID	F - 258
1jnr_A_174	1jnr	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 174
1jnr_A_174	1jnr	A	FADFLAVIN-ADENINE DINUCLEOTIDE	F - 175
1jnr_A_174	1jnr	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 176
1jnr_A_174	1jnr	A	FADFLAVIN-ADENINE DINUCLEOTIDE	F - 177
1qxm_A_104	1qxm	A	EDO1,2-ETHANEDIOL	V - 104
1qxm_A_104	1qxm	A	EDO1,2-ETHANEDIOL	I - 105
1rpy_A_434	1rpy	A	MSESELENOMETHIONINE	F - 434
1s3j_A_81	1s3j	A	MSESELENOMETHIONINE	I - 81
1uxy_*_282	1uxy	*	EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID	H - 285
1uxy_*_282	1uxy	*	EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID	R - 286
1uxy_*_282	1uxy	*	EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID	Q - 287
1uxy_*_282	1uxy	*	EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID	Q - 288
1uxy_*_282	1uxy	*	EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID	A - 289
1uxy_*_282	1uxy	*	EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID	L - 290
1uxy_*_282	1uxy	*	EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID	V - 291

Clusters included in this Subclass

CLUSTER: HA.5.36

CLUSTER: HA.6.15

CLUSTER: HA.6.45

CLUSTER: HA.6.63

CLUSTER: HA.7.3

CLUSTER: HA.7.53

CLUSTER: HA.8.1

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