ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.1.7

Subclass Accession number: 7872
Subclass: 4.1.7

PSSM

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 10.1 +/- 14.3
Average RMSD (Å) : 0.473 +/- 0.149

Consensus geometry

d (Å): 3

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XXXXXXXX
(φψ)-conformation:	bbaaalbb

Pattern:	[iltvw]	x	x	x	[dnrwy]	x	[adknt]	x	[ADGKNQR]	x	x
Conservation:	1.900	-1.378	-0.903	0.011	-0.447	-1.318	0.100	0.128	1.047	0.078	0.782

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ar1_B_122	1ar1	B	123	133	WSYEYPNDGVA	EEEEEGGGTEE	bbbbbaaalbb
1ci0_A_105	1ci0	A	108	118	IVFFWKDLQRQ	EEEEETTTTEE	bbbbbaaalbb
1ebf_A_283	1ebf	A	288	298	IGKVDVATKSV	EEEEETTTTEE	bbbbbaaalbb
1gk9_B_124	1gk9	B	126	136	ILQTDQTTQTA	EEEEETTTTEE	xabbbaaalbb
1h6l_A_128	1h6l	A	131	141	IYAIDGKNGTL	EEEEETTTTEE	bbxxbaaavbb
1itv_A_119	1itv	A	120	130	LWRFDVKAQMV	EEEEETTTTEE	bbxbxaaalbb
1l8k_A_154	1l8k	A	159	169	LQLENINSGET	EEEEETTTTEE	bbbbxaaNvxb
1lcy_A_82	1lcy	A	87	97	VTAVDPVADIA	EEEEETTTTEE	xabbbaaalbb
1ll7_A_331	1ll7	A	331	341	QVTELEDIAAS	EEEEETTTTEE	bxbbxaaalbb
1ni9_A_300	1ni9	A	305	315	TLLIRGKSRTI	EEEEETTTTEE	bxbbbaaalbb
1nrg_A_126	1nrg	A	129	139	LVFYWEPLNRQ	EEEEEGGGTEE	bbbbbaaalbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ar1_B_122	1ar1	B	CUCOPPER (II) ION	W - 123
1ci0_A_105	1ci0	A	FMNFLAVIN MONONUCLEOTIDE	F - 111
1ci0_A_105	1ci0	A	FMNFLAVIN MONONUCLEOTIDE	Q - 116
1ci0_A_105	1ci0	A	FMNFLAVIN MONONUCLEOTIDE	R - 117
1ci0_A_105	1ci0	A	FMNFLAVIN MONONUCLEOTIDE	Q - 118
1ci0_A_105	1ci0	A	FMNFLAVIN MONONUCLEOTIDE	R - 120
1gk9_B_124	1gk9	B	EDO1,2-ETHANEDIOL	L - 127
1gk9_B_124	1gk9	B	EDO1,2-ETHANEDIOL	Q - 128
1gk9_B_124	1gk9	B	EDO1,2-ETHANEDIOL	T - 135
1gk9_B_124	1gk9	B	EDO1,2-ETHANEDIOL	Y - 137
1gk9_B_124	1gk9	B	EDO1,2-ETHANEDIOL	K - 139
1nrg_A_126	1nrg	A	SEO2-MERCAPTOETHANOL	P - 135
1nrg_A_126	1nrg	A	SEO2-MERCAPTOETHANOL	L - 136

Clusters included in this Subclass

CLUSTER: HA.3.38

CLUSTER: HA.4.35

CLUSTER: HA.5.25