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Information on SUBCLASS 2.6.3
Subclass Accession number: 8263
Subclass: 2.6.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 22.6 +/- 20.4
Average RMSD (Å) : 0.369 +/- 0.103

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XhGhXh
(φψ)-conformation: aagpbb
Pattern: xx[aflpv][AFILY][ekqrt]x[acly][G][afglmv][degknr][acfpv]
Conservation:-0.518-0.765-0.2660.141-0.119-0.254-0.2572.939-0.358-0.291-0.252
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b8o_A_2221b8o   A225235VIVARHCGLRVHHHHHHTT-EEaaaaaaavxxb
1ccw_A_181ccw   A2434DHAFTNAGFNVHHHHHHTT-EEaaaaaaagxxx
1g2o_A_2101g2o   A213223TIAARAAGAEVHHHHHHTT-EEaaaaaaavbxb
1g60_A_2251g60   A227237AIVAKKLGRNFHHHHHHTT-EEaaaaaaavbxb
1lhp_A_211lhp   A2535TFPLQVLGFEVHHHHHHTT-EEaaaaaaavxxb
1m1n_A_3641m1n   A364374IGAYEDLGMEVHHHHHTTT-EEaaaaaaavxbx
1mio_B_3211mio   B328338SKFIIELGAIPHHHHHTTT-EEaaaaaaagxxx
1n8j_A_451n8j   A5767YEELQKLGVDVHHHHHHTTEEEaaaaaaavbxb
1nox_*_1251nox   -144154LLLLEAYGLGSHHHHHHTT-EEaaaaaaavbxb
1o98_A_4111o98   A429439VDAILAKGGIAHHHHHHTT-EEaaaaaaavxbb
1qe5_A_2251qe5   A228238AIAARHCGLEVHHHHHHTT-EEaaaaaaavxxb
1xgs_A_1291xgs   A136146ENEIRKRGFKPHHHHHTTT-EEaaaaaaavbbx
6mht_A_236mht   A2535RLALESCGAECHHHHHTTT-EEaaaaaaavxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b8o_A_2221b8o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL T - 242
1b8o_A_2221b8o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL N - 243
1b8o_A_2221b8o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL K - 244
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN V - 18
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN G - 19
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN N - 20
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN I - 22
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN L - 23
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN F - 27
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN L - 40
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL T - 230
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL N - 231
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL L - 232
1g60_A_2251g60   A     SAMS-ADENOSYLMETHIONINE T - 225
1g60_A_2251g60   A     SAMS-ADENOSYLMETHIONINE T - 226
1g60_A_2251g60   A     SAMS-ADENOSYLMETHIONINE C - 240
1g60_A_2251g60   A     SAMS-ADENOSYLMETHIONINE D - 241
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE Y - 137
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE L - 140
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE L - 144
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE V - 155
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE P - 156
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE M - 157
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE G - 23
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE F - 24
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE N - 39

Clusters included in this Subclass
CLUSTER: HE.3.57
CLUSTER: HE.4.85