Information on SUBCLASS 3.1.8 |
Subclass Accession number: 8304
Subclass: 3.1.8 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 8.3 +/- 10.9 Average RMSD (Å) : 1.000 +/- 0.115 Consensus geometry
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Consensus Sequence: | XXchXhh |
(φψ)-conformation: | aagpabb |
Pattern: | x | [ASV] | x | [GIVW] | x | x | x | x | x | [AEKL] | x | x | [DGR] | [LPVY] | [DP] | [AGVY] | x | [GIVY] |
Conservation: | 0.008 | 0.564 | -0.318 | -0.808 | 0.942 | -0.400 | 0.117 | -0.644 | -0.400 | -0.563 | 0.253 | -0.236 | 0.575 | -0.563 | 3.450 | -0.644 | -0.688 | -0.644 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bvu_A_79 | 1bvu | A | 85 | 102 | LAAWMTWKTAVMDLPYGG | HHHHHHHHHHHHT-S-EE | aaaaaaaaaaaavxabbb |
1gmx_A_70 | 1gmx | A | 70 | 87 | SSKGAAQYLLQQGYDVVY | HHHHHHHHHHHHT-SSEE | aaaaaaaaaaaagxabbb |
1j93_A_58 | 1j93 | A | 61 | 78 | VVEISLQPWKVFRPDGVI | HHHHHHHHHHHH--SEEE | aaaaaaaaaaaalxabbx |
1qs0_B_231 | 1qs0 | B | 231 | 248 | TVYVAQVAAEESGVDAEV | HHHHHHHHHHHH----EE | aaaaaaaaaaaagpaxxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gmx_A_70 | 1gmx | A | CSSS-MERCAPTOCYSTEINE | S - 70 |
1gmx_A_70 | 1gmx | A | CSSS-MERCAPTOCYSTEINE | S - 71 |
1gmx_A_70 | 1gmx | A | CSSS-MERCAPTOCYSTEINE | K - 72 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | K - 72 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | G - 73 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | A - 74 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | A - 75 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | Q - 76 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | Y - 77 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | L - 78 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | L - 79 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | Q - 80 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | Q - 81 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | Y - 83 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | D - 84 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | V - 85 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | V - 86 |
1gmx_A_70 | 1gmx | A | EDO1,2-ETHANEDIOL | Y - 87 |
1gmx_A_70 | 1gmx | A | CSSS-MERCAPTOCYSTEINE | I - 89 |
1qs0_B_231 | 1qs0 | B | MSESELENOMETHIONINE | V - 244 |
1qs0_B_231 | 1qs0 | B | MSESELENOMETHIONINE | D - 245 |
1qs0_B_231 | 1qs0 | B | MSESELENOMETHIONINE | D - 250 |
Clusters included in this Subclass |
CLUSTER: HE.3.143 |