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Information on SUBCLASS 3.4.5
Subclass Accession number: 8333
Subclass: 3.4.5 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 9.0 +/- 11.3
Average RMSD (Å) : 0.871 +/- 0.221

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXXXXX
(φψ)-conformation: aalppbb
Pattern: [gqs]x[FGLVY][aeqs][afgklt][AGILMV][hrswy]x[afgmy][aclv]x[aiklv][hlmy][EGKNR][afiklv][DNPR][hiv]x[AILPVY]
Conservation:0.502-1.6200.0440.929-1.5820.123-0.655-0.899-0.7580.3670.212-0.7591.3911.101-0.9451.4801.622-0.5570.004
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fec_A_131fec   A1432GGLEAGWNAASLHKKRVAVHHHHHHHHHHHHH---EEEaaaaaaaaaaaaalxxbbb
1iho_A_1531iho   A154172QQLALIRKMVADMGFDIEIHHHHHHHHHHHHHT---EEaaaaaaaaaaaaavxxbxx
1iib_A_131iib   A1836LLVSKMRAQAEKYEVPVIIHHHHHHHHHHHHTT--EEEaaaaaaaaaaaaalxxbbb
1j0a_A_1931j0a   A193211GTLAGLSLGLSILNEDIRPHHHHHHHHHHHHTT---EEaaaaaaaaaaaaalxxbxw
1jjf_A_2331jjf   A234252GFGQRVHEYCVANNINHVYHHHHHHHHHHHHTT---EEaaaaaaaaaaaaalbxbbb
1k20_A_141k20   A1937SSYAFAYLAREAYGLDTEAHHHHHHHHHHHHH---EEEaaaaaaaaaaaaavxxxbx
1qs0_A_2191qs0   A219237SDFHTALTFAHVYRAPVILHHHHHHHHHHHHHT--EEEaaaaaaaaaaaaalxxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fec_A_131fec   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 13
1fec_A_131fec   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 14
1fec_A_131fec   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 15
1fec_A_131fec   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 33
1fec_A_131fec   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 34
1iho_A_1531iho   A     EDO1,2-ETHANEDIOL Q - 155
1j0a_A_1931j0a   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 193
1j0a_A_1931j0a   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 194
1j0a_A_1931j0a   A     PLPPYRIDOXAL-5'-PHOSPHATE L - 195
1k20_A_141k20   A     MNMANGANESE (II) ION S - 14
1k20_A_141k20   A     MNMANGANESE (II) ION D - 15
1k20_A_141k20   A     MNMANGANESE (II) ION A - 16
1qs0_A_2191qs0   A     MSESELENOMETHIONINE F - 227
1qs0_A_2191qs0   A     MSESELENOMETHIONINE Y - 231
1qs0_A_2191qs0   A     MSESELENOMETHIONINE A - 233
1qs0_A_2191qs0   A     MSESELENOMETHIONINE P - 234
1qs0_A_2191qs0   A     MSESELENOMETHIONINE V - 235
1qs0_A_2191qs0   A     MGMAGNESIUM ION V - 240
1qs0_A_2191qs0   A     TDPTHIAMIN DIPHOSPHATE V - 240
1qs0_A_2191qs0   A     MGMAGNESIUM ION N - 241

Clusters included in this Subclass
CLUSTER: HE.4.66