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PDB code:

Information on SUBCLASS 5.5.1

Subclass Accession number: 8565 Subclass: 5.5.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 14 Average sequence ID (%) : 17.3 +/- 18.5 Average RMSD (Å) : 0.536 +/- 0.231 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1agx_*_64	1agx	-	74	87	VNDLVKKPSVNGVV	HHHHHTSTT--EEE	aaaaaaxaaxabbb
1b0a_A_76	1b0a	A	83	96	IDTLNADNTIDGIL	HHHHHT-TT--EEE	aaaaaabaaxabbb
1coz_A_52	1coz	A	56	69	KLILETIRYVDEVI	HHHHTTSTT--EEE	aaaaaaxaaxabbb
1d2n_A_520	1d2n	A	533	546	VQQTKNSDRTPLVS	HHHHHH-SS-SEEE	aaaaaaxaababbb
1dci_A_82	1dci	A	92	105	FQKISKDSDCRAVV	HHHHHT-TT--EEE	aaaaaaxaaxabbb
1eua_A_169	1eua	A	169	182	YRDYLALKSVLCIG	HHHHHTSTTBS-EE	aaaaaaxaababbb
1hqk_A_59	1hqk	A	63	76	AGELARKEDIDAVI	HHHHHT-TT--EEE	aaaaaaxaababbb
1inl_A_103	1inl	A	105	118	LREVLKHDSVEKAI	HHHHTTSTT-SEEE	aaaaaaxaaxabbb
1iy9_A_89	1iy9	A	91	104	IREILKHPSVKKAT	HHHHTT-TT-SEEE	aaaaaabaaxabbx
1nth_A_140	1nth	A	144	157	HMSYALEKEVDTIV	HHHHHT-TT--EEE	aaaaaaxaaxabbb
1o7j_A_67	1o7j	A	77	90	VNELLARDDVDGVV	HHHHHTSTT--EEE	aaaaaaxaababbb
1oi7_A_187	1oi7	A	191	204	LPLFNEDPETEAVV	HHHHHT-TT--EEE	aaaaaaxaaxabbb
2scu_A_187	2scu	A	191	204	LEMFEKDPQTEAIV	HHHHHT-TT--EEE	aaaaaaxaababbx
4pga_A_72	4pga	A	82	95	VAELADSNDVDGIV	HHHHHH-TT-SEEE	aaaaaaxaababbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d2n_A_520	1d2n	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	V - 522
1dci_A_82	1dci	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	R - 82
1dci_A_82	1dci	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	A - 83
1dci_A_82	1dci	A	EDO1,2-ETHANEDIOL	W - 85
1nth_A_140	1nth	A	BGX4-METHYL-PYRROLINE-5-CARBOXYLIC ACID	V - 157
1o7j_A_67	1o7j	A	GOLGLYCEROL	G - 67
1o7j_A_67	1o7j	A	GOLGLYCEROL	D - 68
1o7j_A_67	1o7j	A	GOLGLYCEROL	L - 71
2scu_A_187	2scu	A	NEPN1-PHOSPHONOHISTIDINE	E - 208

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o7j_A_67	1o7j	A	AC3GOL BINDING SITE FOR CHAIN A	D - 68

Clusters included in this Subclass

CLUSTER: HE.5.72

CLUSTER: HE.6.32

CLUSTER: HE.7.10

CLUSTER: HE.8.52

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