ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.12.1

Subclass Accession number: 8585
Subclass: 5.12.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 28.8 +/- 36.9
Average RMSD (Å) : 0.800 +/- 0.535

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XpXcppcXX
(φψ)-conformation:	aappaaaba

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-1.403	-1.081	-0.115	0.636	-0.974	0.207	-0.213	0.636	0.421	-1.725	0.317	0.684	0.099	-0.724	1.719	1.464	-0.330	0.961	-1.189	-0.437	-0.759	1.009	-0.867	1.721	-1.189	1.133

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e4e_A_17	1e4e	A	18	43	DVSVKSAIEIAANINKEKYEPLYIGI	HHHHHHHHHHHHHS-TTTEEEEEEEE	aaaaaaaaaaaaapxaaabbwbxbxb
1f1j_A_116	1f1j	A	116	141	CAKMQDLLKKASEEDHTNAACFACIL	HHHHHHHHHHHHHS-GGGEEEEEEEE	aaaaaaaaaaaaaxxaaababbbbbb
1i51_A_116	1i51	A	116	141	CAKMQDLLKKASEEDHTNAACFACIL	HHHHHHHHHHHHHS--TTEEEEEEEE	aaaaaaaaaaaaaxbaaaxabbbbbb
1nme_A_93	1nme	A	93	118	REEIVELMRDVSKEDHSKRSSFVCVL	HHHHHHHHHHHHTS--TTEEEEEEEE	aaaaaaaaaaaaaxxaaababbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4e_A_17	1e4e	A	PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID	V - 19
1e4e_A_17	1e4e	A	PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID	S - 23
1e4e_A_17	1e4e	A	GOLGLYCEROL	E - 34
1e4e_A_17	1e4e	A	GOLGLYCEROL	E - 37
1e4e_A_17	1e4e	A	GOLGLYCEROL	L - 39
1nme_A_93	1nme	A	1583-(2-MERCAPTO-ACETYLAMINO)-4-OXO-PENTANOIC ACID	L - 119

Clusters included in this Subclass