Information on SUBCLASS 13.2.1 |
Subclass Accession number: 8767
Subclass: 13.2.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 43.9 +/- 23.3 Average RMSD (Å) : 0.280 +/- 0.084 Consensus geometry
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Consensus Sequence: | hhScRGXPXpYRXMpGh |
(φψ)-conformation: | aapaaabpabaaabpbb |
Pattern: | [AILT] | [HR] | [NQT] | [LV] | [MT] | [ILWY] | x | [FMY] | [GS] | [DNP] | [ER] | [G] | [ILT] | [P] | x | [GNST] | [WY] | [R] | x | [MV] | [DEHN] | [G] | [fy] |
Conservation: | -0.950 | 0.791 | -0.547 | -0.111 | -0.325 | -0.818 | -1.322 | -0.279 | -0.121 | -0.385 | 0.063 | 1.682 | -0.671 | 2.197 | -1.045 | -0.696 | 1.299 | 1.168 | -1.231 | 0.292 | -0.362 | 1.682 | -0.311 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a4e_A_190 | 1a4e | A | 190 | 212 | IHQVMILFSDRGTPANYRSMHGY | HHHHHHHHSGGGSBS-GGG--EE | aaaaaaaaxaaabxabaaabxbb |
1e93_A_172 | 1e93 | A | 172 | 194 | LHQLTIDMSDRGLPLSYRFVHGF | HHHHHHHHSGGGSBS-GGG--EE | aaaaaaaaxaaabxabaaabxbb |
1gwe_A_178 | 1gwe | A | 178 | 200 | AHQVTYLMGPRGLPRTWREMNGY | HHHHHHHHSGGGSBS-GGGS-EE | aaaaaaaaxaaabxabaaabxbb |
1m7s_A_195 | 1m7s | A | 195 | 217 | TRTLTLLYSNEGTPAGYRFMDGN | HHHHHHHHSGGGSBS-GGGS-EE | aaaaaaaaxaaabxabaaabxbb |
1p80_A_250 | 1p80 | A | 250 | 272 | LHNVMWAMSDRGIPRSYRTMEGF | HHHHHHHHSGGGSBS-GGGS-EE | aaaaaaaaxaaabxabaaabxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a4e_A_190 | 1a4e | A | HEMPROTOPORPHYRIN IX CONTAINING FE | Y - 212 |
1e93_A_172 | 1e93 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | F - 194 |
1gwe_A_178 | 1gwe | A | HEMPROTOPORPHYRIN IX CONTAINING FE | Y - 200 |
1m7s_A_195 | 1m7s | A | HEMPROTOPORPHYRIN IX CONTAINING FE | N - 217 |
1p80_A_250 | 1p80 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | F - 272 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gwe_A_178 | 1gwe | A | AC2SO4 BINDING SITE FOR CHAIN A | R - 188 |
1gwe_A_178 | 1gwe | A | AC2SO4 BINDING SITE FOR CHAIN A | N - 198 |
1gwe_A_178 | 1gwe | A | AC2SO4 BINDING SITE FOR CHAIN A | Y - 200 |
Clusters included in this Subclass |
CLUSTER: HE.12.1 |