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Information on SUBCLASS 2.2.4
Subclass Accession number: 8920
Subclass: 2.2.4 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 13.9 +/- 16.9
Average RMSD (Å) : 0.600 +/- 0.288

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXXp
(φψ)-conformation: aalpaa
Pattern: x[efkqry]xxxx[fklt][egs][dnv]x[EKRSW][FIVY]x[adekq]xxx
Conservation:-1.328-0.338-0.055-0.038-1.045-0.2630.3351.7351.111-0.6080.6842.414-0.5410.079-0.658-0.515-0.968
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dl2_A_4351dl2   A441457MFMYHLSHDHKYREWGAHHHHHHH--THHHHHHHaaaaaaavxaaaaaaaa
1fo3_A_4021fo3   A406422RELSRLTGDKKFQEAVEHHHHHHH--THHHHHHHaaaaaaavxaaaaaaaa
1fo3_A_5991fo3   A605621FYLYRVTGDRKYQDWGWHHHHHHH--THHHHHHHaaaaaaavxaaaaaaaa
1gyt_A_2251gyt   A225241EQQMKELGMHSYLAVGQHHHHHHTT-HHHHHHHHaaaaaaavxaaaaaaaa
1kkt_A_2031kkt   A207223TRLSDLTGDEEYAKLSQHHHHHHHS-THHHHHHHaaaaaaavxaaaaaaaa
1lwj_A_2371lwj   A243259IKEAVWKENTRVLIESIHHHHHHTT-SHHHHHHHaaaaaaalbaaaaaaaa
1m6k_A_1081m6k   A108124PKTWMQFSVVWVSQEITHHHHHHTT-HHHHHHHHaaaaaaalxaaaaaaaa
1obb_A_4191obb   A429445ALEAFLTGDIRIIKELLHHHHHHH--HHHHHHHHaaaaaaavxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dl2_A_4351dl2   A     CACALCIUM ION E - 435
1dl2_A_4351dl2   A     GOLGLYCEROL E - 435
1dl2_A_4351dl2   A     CACALCIUM ION E - 438
1fo3_A_5991fo3   A     KIFKIFUNENSINE E - 599
1fo3_A_5991fo3   A     CACALCIUM ION E - 599
1fo3_A_5991fo3   A     KIFKIFUNENSINE E - 602
1fo3_A_5991fo3   A     CACALCIUM ION E - 602
1lwj_A_2371lwj   A     ACGMODIFIED ACARBOSE PENTASACCHARIDE F - 237
1lwj_A_2371lwj   A     ACGMODIFIED ACARBOSE PENTASACCHARIDE D - 238
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID W - 111
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID M - 112
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID F - 114
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL F - 114
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 115
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL S - 115
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 116
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 117
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL V - 117
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL W - 118
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 120
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID Q - 121
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL E - 122
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL I - 123
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL K - 126

Clusters included in this Subclass
CLUSTER: HH.2.169
CLUSTER: HH.4.47