Information on SUBCLASS 3.3.12 |
Subclass Accession number: 8991
Subclass: 3.3.12 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 18.5 +/- 29.0 Average RMSD (Å) : 0.267 +/- 0.058 Consensus geometry
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Consensus Sequence: | Xpchppp |
(φψ)-conformation: | aalppaa |
Pattern: | [DEK] | [EL] | [GS] | [IT] | x | [AK] | [FY] | x | [CGV] | [DG] | [EG] | [HNR] | [DG] | [FI] | [DNS] | [EQY] | [DEH] | [MR] | [LV] | [AK] | [KNT] | x | x | [DE] | [AKR] | [LV] | x |
Conservation: | 0.242 | -0.926 | 0.794 | -0.200 | -1.138 | -0.008 | 2.628 | -0.658 | -1.350 | 0.641 | -0.161 | 0.348 | 0.641 | 0.794 | 0.242 | -0.289 | 0.348 | 0.144 | 0.565 | -0.008 | -0.395 | -1.881 | -1.350 | 2.052 | -0.395 | 0.565 | -1.244 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a76_*_283 | 1a76 | - | 283 | 309 | KEGIIKFLVDENDFNYDRVKKHVDKLY | HHHHHHHHTTTT---HHHHHHHHHHHH | aaaaaaaaaaaalxxaaaaaaaaaaaa |
1b43_A_296 | 1b43 | A | 296 | 322 | EEGILKFLCDEHDFSEERVKNGLERLK | HHHHHHHHTTTT---HHHHHHHHHHHH | aaaaaaaaaaaalxxaaaaaaaaaaaa |
4tmk_A_102 | 4tmk | A | 102 | 128 | DLSTQAYQGGGRGIDQHMLATLRDAVL | HHHHHHHTTTTT---HHHHHHHHHHHH | aaaaaaaaaaaavxpaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
4tmk_A_102 | 4tmk | A | T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE | D - 102 |
4tmk_A_102 | 4tmk | A | T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE | S - 104 |
4tmk_A_102 | 4tmk | A | T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE | T - 105 |
4tmk_A_102 | 4tmk | A | T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE | Q - 106 |
4tmk_A_102 | 4tmk | A | T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE | Y - 108 |
4tmk_A_102 | 4tmk | A | T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE | Q - 109 |
Clusters included in this Subclass |
CLUSTER: HH.6.100 |
CLUSTER: HH.8.27 |