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Information on SUBCLASS 3.3.12
Subclass Accession number: 8991
Subclass: 3.3.12 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 18.5 +/- 29.0
Average RMSD (Å) : 0.267 +/- 0.058

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: Xpchppp
(φψ)-conformation: aalppaa
Pattern: [DEK][EL][GS][IT]x[AK][FY]x[CGV][DG][EG][HNR][DG][FI][DNS][EQY][DEH][MR][LV][AK][KNT]xx[DE][AKR][LV]x
Conservation:0.242-0.9260.794-0.200-1.138-0.0082.628-0.658-1.3500.641-0.1610.3480.6410.7940.242-0.2890.3480.1440.565-0.008-0.395-1.881-1.3502.052-0.3950.565-1.244
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a76_*_2831a76   -283309KEGIIKFLVDENDFNYDRVKKHVDKLYHHHHHHHHTTTT---HHHHHHHHHHHHaaaaaaaaaaaalxxaaaaaaaaaaaa
1b43_A_2961b43   A296322EEGILKFLCDEHDFSEERVKNGLERLKHHHHHHHHTTTT---HHHHHHHHHHHHaaaaaaaaaaaalxxaaaaaaaaaaaa
4tmk_A_1024tmk   A102128DLSTQAYQGGGRGIDQHMLATLRDAVLHHHHHHHTTTTT---HHHHHHHHHHHHaaaaaaaaaaaavxpaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
4tmk_A_1024tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE D - 102
4tmk_A_1024tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE S - 104
4tmk_A_1024tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 105
4tmk_A_1024tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE Q - 106
4tmk_A_1024tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE Y - 108
4tmk_A_1024tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE Q - 109

Clusters included in this Subclass
CLUSTER: HH.6.100
CLUSTER: HH.8.27