ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.24.1

Subclass Accession number: 9073
Subclass: 4.24.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 20.6 +/- 23.8
Average RMSD (Å) : 0.925 +/- 0.395

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	hhcpXXpX
(φψ)-conformation:	aalbbbaa

Pattern:	[KRT]	[AGM]	x	[AV]	[AE]	[GY]	[ASV]	[AEKL]	[FHL]	[AC]	x	[AIV]	[LV]	[DG]	x	x	[CDEK]	[NRST]	[DESW]	x	x	[AES]	[FKQ]	[AIM]	x	[EQR]	[AIY]	[L]	[ACL]	[HKSY]
Conservation:	0.365	-0.523	-0.676	0.893	0.489	1.272	-0.152	-1.178	-0.164	1.352	-0.990	0.508	1.316	1.649	-1.052	-1.366	-0.864	-0.174	-0.801	-1.052	0.718	0.164	-0.823	-0.051	-1.241	0.953	-0.696	2.587	-0.036	-0.425

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gai_*_186	1gai	-	194	223	RALVEGSAFATAVGSSCSWCDSQAPQILCY	HHHHHHHHHHHHTT---HHHHHHHHHHHHH	aaaaaaaaaaaaavbbbaaaaaaaaaaaaa
1gnl_A_137	1gnl	A	151	180	KGMAAYAKHADVLGKHENSLDAFMQEALAK	HHHHHHHHHHHHTT---HHHHHHHHHHHHH	aaaaaaaaaaaaavbbbaaaaaaaaaaaaa
1gnt_A_142	1gnt	A	156	185	KGVAAYAEHAAVLGFRKTEIDEFMLEALAS	HHHHHHHHHHHHTT---HHHHHHHHHHHHH	aaaaaaaaaaaaavbbbaaaaaaaaaaaaa
2sqc_A_41	2sqc	A	41	70	TMEAEYVLLCHILDRVDRDRMEKIRRYLLH	HHHHHHHHHHHHTT---HHHHHHHHHHHHH	aaaaaaaaaaaaalbxxaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gai_*_186	1gai	*	NAGN-ACETYL-D-GLUCOSAMINE	I - 189
1gai_*_186	1gai	*	MANALPHA-D-MANNOSE	S - 208
1gai_*_186	1gai	*	MANALPHA-D-MANNOSE	W - 212
1gai_*_186	1gai	*	MANALPHA-D-MANNOSE	S - 215
1gai_*_186	1gai	*	MANALPHA-D-MANNOSE	Q - 216
1gai_*_186	1gai	*	MANALPHA-D-MANNOSE	P - 218
1gai_*_186	1gai	*	MANALPHA-D-MANNOSE	Q - 219
1gai_*_186	1gai	*	NAGN-ACETYL-D-GLUCOSAMINE	Q - 219
1gai_*_186	1gai	*	MANALPHA-D-MANNOSE	L - 221
1gai_*_186	1gai	*	NAGN-ACETYL-D-GLUCOSAMINE	C - 222
1gai_*_186	1gai	*	NAGN-ACETYL-D-GLUCOSAMINE	Y - 223
1gnl_A_137	1gnl	A	FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER	Y - 156
1gnt_A_142	1gnt	A	FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER	Y - 161
2sqc_A_41	2sqc	A	C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE	T - 41
2sqc_A_41	2sqc	A	C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE	M - 42

Clusters included in this Subclass