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Information on SUBCLASS 5.1.3
Subclass Accession number: 9093
Subclass: 5.1.3 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 10.8 +/- 12.0
Average RMSD (Å) : 1.057 +/- 0.299

Consensus geometry
d (Å): 17 delta (°): 135-180 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXXXhXhp
(φψ)-conformation: aalbpppaa
Pattern: [akst]xx[filt][egn]x[dekpr][fhilv][ADPST][flpv][DEGQS]x[AFIKTV]x[DHKQ]
Conservation:0.719-0.579-0.8540.1530.787-1.469-0.120-0.4330.930-0.6191.628-1.027-0.200-0.8431.925
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cfr_*_351cfr   -5064AIRLGGKISDGSFNKHHHHT-B--HHHHHHaaaavbbbxaaaaaa
1jbw_A_2601jbw   A276290AKQTEWPLTPQNIRQHHHTT----HHHHHHaaaalbwbxaaaaaa
1mhy_B_3731mhy   B373387ADKIGFRVDVDQKVDHHHHT----HHHHHHaaaavxxbbaaaaaa
1npd_A_2601npd   A268282TLWTGKDFPLEYVKQHHHHSS---HHHHHHaaaavbxxxaaaaaa
1nyt_A_2381nyt   A250264LLWHGVLPDVEPVIKHHHHSS---HHHHHHaaaavbxxxaaaaaa
1qo2_A_1681qo2   A168182KDGTLQEHDFSLTKKHHHHT----HHHHHHaaaalbxpbaaaaaa
1ryp_F_781ryp   F96110SLVFNRKLAVERAGHHHHHS----HHHHHHaaaalbxpxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jbw_A_2601jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER Y - 260
1jbw_A_2601jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER Q - 261
1jbw_A_2601jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER R - 263
1jbw_A_2601jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER N - 264
1npd_A_2601npd   A     MSESELENOMETHIONINE L - 260
1npd_A_2601npd   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 260
1npd_A_2601npd   A     MSESELENOMETHIONINE W - 261
1npd_A_2601npd   A     MSESELENOMETHIONINE Q - 262
1npd_A_2601npd   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 262
1npd_A_2601npd   A     MSESELENOMETHIONINE G - 263
1npd_A_2601npd   A     MSESELENOMETHIONINE A - 264
1npd_A_2601npd   A     MSESELENOMETHIONINE Q - 266
1npd_A_2601npd   A     MSESELENOMETHIONINE F - 275
1npd_A_2601npd   A     MSESELENOMETHIONINE Y - 279
1npd_A_2601npd   A     MSESELENOMETHIONINE V - 280
1npd_A_2601npd   A     MSESELENOMETHIONINE K - 281
1npd_A_2601npd   A     MSESELENOMETHIONINE Q - 282
1nyt_A_2381nyt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 238
1nyt_A_2381nyt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 240
1nyt_A_2381nyt   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE M - 240
1nyt_A_2381nyt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 241
1nyt_A_2381nyt   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE L - 241
1nyt_A_2381nyt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 242
1nyt_A_2381nyt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 244
1nyt_A_2381nyt   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE Q - 244
1nyt_A_2381nyt   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE A - 245

Clusters included in this Subclass
CLUSTER: HH.5.35