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Information on SUBCLASS 1.3.1
Subclass Accession number: 96
Subclass: 1.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 16.9 +/- 16.4
Average RMSD (Å) : 0.458 +/- 0.202

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXGhX
(φψ)-conformation: aagbb
Pattern: [adeknqr][adkr][AFIL]x[DKNQRS]x[EG][afilmy]xxx
Conservation:0.102-0.2380.576-0.3190.243-1.0122.462-0.211-0.917-0.686-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ako_*_1811ako   -188197DRLMSWGLVD.HHHHHTTEEE.aaaaaagbbx.
1c7n_A_1251c7n   A128138MAIKNQERKIIHHHHTTT-EEEaaaaaalxbxb
1h70_A_2191h70   A223233EKIARLGYRVIHHHHTTT-EEEaaaaaagxxxb
1i9s_A_771i9s   A7787NDIEKEGIKYIHHHHTTT-EEEaaaaaavxxbb
1iug_A_2951iug   A300308EAFAQRGAV..HHHHTTTEE..aaaaaavbb..
1kaf_A_1691kaf   A173183QKFTDIGMSCKHHHHTTT-EEEaaaaaagxxbb
1l5j_A_2201l5j   A224234EALQQKGFPLAHHHHTTSS-EEaaaaaavbxxb
1nri_A_1511nri   A158168QYAKSLGALTIHHHHHHT-EEEaaaaaagxxbb
1ohe_A_2711ohe   A271281KRFTDAGFDHHHHHHTTT-EEEaaaaaavxxxb
1q0r_A_411q0r   A4555RRLADGGLHVIHHHHTTT-EEEaaaaaagbxxb
1q41_A_1551q41   A170178AYIHSFGIC..HHHHTTTEE..aaaaaavxb..
1vgy_A_321vgy   A3242ERLHKIGFAAEHHHHTTT-EEEaaaaaavxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c7n_A_1251c7n   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 126
1i9s_A_771i9s   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED D - 78
1i9s_A_771i9s   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED K - 81
1nri_A_1511nri   A     MSESELENOMETHIONINE V - 153
1nri_A_1511nri   A     MSESELENOMETHIONINE I - 154
1nri_A_1511nri   A     MSESELENOMETHIONINE L - 157
1nri_A_1511nri   A     MSESELENOMETHIONINE I - 168
1nri_A_1511nri   A     MSESELENOMETHIONINE S - 169
1nri_A_1511nri   A     MSESELENOMETHIONINE I - 170
1nri_A_1511nri   A     MSESELENOMETHIONINE A - 171
1vgy_A_321vgy   A     MSESELENOMETHIONINE E - 32
1vgy_A_321vgy   A     MSESELENOMETHIONINE R - 33
1vgy_A_321vgy   A     MSESELENOMETHIONINE L - 34
1vgy_A_321vgy   A     MSESELENOMETHIONINE H - 35
1vgy_A_321vgy   A     MSESELENOMETHIONINE E - 42

Clusters included in this Subclass
CLUSTER: HE.3.170
CLUSTER: HE.3.57
CLUSTER: HE.5.104
CLUSTER: HE.5.207