| Accession | HsInv0166 | Region of the inversion | chr7:70058905-70076824 |
| Status | Obsolete | Prediction type | Simple |
| Estimated Inversion Size | 17,919 bp | Supporting predictions | 5 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr7:70058905-70058906 |
| Ancestral orientation | NA | Breakpoint 2 | chr7:70076823-70076824 |
|
|
 |
|
|
Human Polymorphic Inversion DataBase
|
General information
- Region map
+ Predictions
| Description | Next generation sequencing and analysis by paired-end mapping of a Korean individual genome | ||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr7:70058658-70058907 | Breakpoint 2 | chr7:70076553-70076824 | ||||
| Individuals |
| ||||||
| Description | Next-generation sequencing and analysis by paired-end mapping of a male Han Chinese individual genome | ||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||
| Name | |||
| Breakpoint 1 | chr7:70058865-70058865 | Breakpoint 2 | chr7:70076604-70076604 |
| Individuals | |||
| Description | Identification of human inversion polymorphisms by comparative analysis of human and chimpanzee genome sequence assemblies | ||||||||||
| Method | Genome sequence comparison | ||||||||||
| Name | |||
| Breakpoint 1 | chr7:70058905-70058906 | Breakpoint 2 | chr7:70076823-70076824 |
| Individuals | |||
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr7:70032007-70064629 | Breakpoint 2 | chr7:70076139-70106476 | ||||||||||||||||||||
| D/C Score | 0.75 | Disc. Support Prob. | 0.02333 | ||||||||||||||||||||
| Support | 20 probes  | ||||||||||||||||||||||
| Individuals |
| ||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr7:70031528-70066512 | Breakpoint 2 | chr7:70076380-70104763 | ||||||||||||||||||||
| D/C Score | 0.26 | Disc. Support Prob. | 0.71097 | ||||||||||||||||||||
| Support | 24 probes | ||||||||||||||||||||||
| Individuals |
| ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr7:70058905-70058906 | Breakpoint 2 | chr7:70076823-70076824 | ||
| Definition method | Default informatic definition | ||||
| Mechanism of origin |
ND
|
||||
| Flexibility | 9.85 | GC content | 0.38 | Stability | 1.88 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
HsInv0166 and HsInv0063 merge into HsInv1052
- 2015-02-23 10:14:40
| Breakpoint 1 | chr7:70058905-70058906 | Breakpoint 2 | chr7:70076823-70076824 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:40
| Breakpoint 1 | chr7:70058307-70059258 | Breakpoint 2 | chr7:70076224-70077153 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
