Package biana :: Package BianaParser :: Module biopaxLevel2Parser

Module biopaxLevel2Parser

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

Classes

[hide private]

BiopaxEntity

BiopaxPhysicalEntityParticipant
Biopax definition: any additional special characteristics of a physical entity in the context of an interaction or complex.

BiopaxPathway

BiopaxPathwayStep
A step in a patwhay Multiple interactions may occur in a pathway step, each should be listed in the STEP-INTERACTIONS property.

BiopaxInteraction

BiopaxPhysicalInteraction

BiopaxConversion

BiopaxComplexAssembly

BiopaxTransport

BiopaxBiochemicalReaction

BiopaxControl
An interaction in which one entity regulates, modifies, or otherwise influences another.

BiopaxCatalysis
A control interaction in which a physical entity (a catalyst) increases the rate of a conversion interaction by lowering its activation energy.

BiopaxModulation

BiopaxPhysicalEntity

BiopaxComplex

BiopaxProtein

BiopaxDNA

BiopaxRNA

BiopaxSmallMolecule

BiopaxXREF

BiopaxBioSource

BiopaxDataSource

BiopaxOpenControlledVocabulary

BiopaxLevel2Parser