Package biana :: Package BianaObjects :: Module Sequence :: Class DNASequence
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Class DNASequence

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Instance Methods [hide private]
 
__init__(self, sequence, sequenceMD5=None, sequenceID=None)
"sequence": the sequence itself.
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_get_digested_code(self, window) source code
 
_get_fragmented_sequence(self)
it returns a list with the ordered indices of the fragments
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Inherited from Sequence: __str__, get_fragmented_sequence, get_length, get_sequence, get_sequenceID, get_sequence_MD5, get_type, set_sequenceID

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__

Static Methods [hide private]

Inherited from Sequence: read_sequences_file

Class Variables [hide private]
  translation_dict = None
  dictionary = 'ACTG'
  window_size = 8
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, sequence, sequenceMD5=None, sequenceID=None)
(Constructor)

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"sequence": the sequence itself. It is processed...

Overrides: object.__init__

_get_fragmented_sequence(self)

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it returns a list with the ordered indices of the fragments

Overrides: Sequence._get_fragmented_sequence
(inherited documentation)